Strain Fitness in Serratia liquefaciens MT49 around IAI46_05210

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_05205 and IAI46_05210 are separated by 37 nucleotidesIAI46_05210 and IAI46_05215 are separated by 101 nucleotidesIAI46_05215 and IAI46_05220 are separated by 150 nucleotides IAI46_05205: IAI46_05205 - mechanosensitive channel MscK, at 1,118,530 to 1,121,925 _05205 IAI46_05210: IAI46_05210 - pleiotropic regulatory protein RsmS, at 1,121,963 to 1,122,142 _05210 IAI46_05215: IAI46_05215 - primosomal replication protein, at 1,122,244 to 1,122,780 _05215 IAI46_05220: IAI46_05220 - DUF454 family protein, at 1,122,931 to 1,123,311 _05220 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -1 0 1 2at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.042 kb on - strand, within IAI46_05205at 1121.128 kb on + strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.231 kb on - strand, within IAI46_05205at 1121.231 kb on - strand, within IAI46_05205at 1121.415 kb on + strand, within IAI46_05205at 1121.415 kb on + strand, within IAI46_05205at 1121.416 kb on - strand, within IAI46_05205at 1121.416 kb on - strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.509 kb on - strand, within IAI46_05205at 1121.570 kb on + strand, within IAI46_05205at 1121.579 kb on + strand, within IAI46_05205at 1121.580 kb on - strand, within IAI46_05205at 1121.590 kb on + strandat 1121.590 kb on + strandat 1121.733 kb on - strandat 1121.741 kb on + strandat 1121.742 kb on - strandat 1121.755 kb on + strandat 1121.756 kb on - strandat 1121.756 kb on - strandat 1121.756 kb on - strandat 1121.757 kb on + strandat 1121.757 kb on + strandat 1121.781 kb on + strandat 1121.839 kb on + strandat 1121.839 kb on + strandat 1121.839 kb on + strandat 1121.840 kb on - strandat 1121.889 kb on - strandat 1121.924 kb on - strandat 1121.924 kb on - strandat 1121.982 kb on + strand, within IAI46_05210at 1121.982 kb on + strand, within IAI46_05210at 1122.022 kb on - strand, within IAI46_05210at 1122.101 kb on + strand, within IAI46_05210at 1122.101 kb on + strand, within IAI46_05210at 1122.102 kb on - strand, within IAI46_05210at 1122.134 kb on + strandat 1122.142 kb on + strandat 1122.142 kb on + strandat 1122.143 kb on - strandat 1122.172 kb on + strandat 1122.190 kb on - strandat 1122.191 kb on + strandat 1122.191 kb on + strandat 1122.192 kb on - strandat 1122.192 kb on - strandat 1122.217 kb on + strandat 1122.270 kb on + strandat 1122.271 kb on - strandat 1122.271 kb on - strandat 1122.323 kb on - strand, within IAI46_05215at 1122.426 kb on - strand, within IAI46_05215at 1122.426 kb on - strand, within IAI46_05215at 1122.635 kb on + strand, within IAI46_05215at 1122.636 kb on - strand, within IAI46_05215at 1122.675 kb on + strand, within IAI46_05215at 1122.675 kb on + strand, within IAI46_05215at 1122.676 kb on - strand, within IAI46_05215at 1122.733 kb on + strandat 1122.800 kb on + strandat 1122.801 kb on - strandat 1122.850 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.893 kb on + strandat 1122.894 kb on - strandat 1122.998 kb on + strand, within IAI46_05220at 1122.999 kb on - strand, within IAI46_05220at 1122.999 kb on - strand, within IAI46_05220at 1123.079 kb on + strand, within IAI46_05220at 1123.080 kb on - strand, within IAI46_05220at 1123.105 kb on + strand, within IAI46_05220at 1123.106 kb on - strand, within IAI46_05220at 1123.106 kb on - strand, within IAI46_05220at 1123.106 kb on - strand, within IAI46_05220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
1,121,028 + IAI46_05205 0.74 -0.2
1,121,028 + IAI46_05205 0.74 -0.0
1,121,028 + IAI46_05205 0.74 -0.9
1,121,028 + IAI46_05205 0.74 +1.5
1,121,028 + IAI46_05205 0.74 -0.5
1,121,041 + IAI46_05205 0.74 +0.8
1,121,041 + IAI46_05205 0.74 -0.8
1,121,041 + IAI46_05205 0.74 +1.4
1,121,041 + IAI46_05205 0.74 +1.6
1,121,042 - IAI46_05205 0.74 -0.5
1,121,128 + IAI46_05205 0.77 +0.3
1,121,129 - IAI46_05205 0.77 -1.0
1,121,129 - IAI46_05205 0.77 -0.1
1,121,129 - IAI46_05205 0.77 +0.7
1,121,223 - IAI46_05205 0.79 -0.3
1,121,223 - IAI46_05205 0.79 +0.3
1,121,223 - IAI46_05205 0.79 +0.7
1,121,231 - IAI46_05205 0.80 +0.7
1,121,231 - IAI46_05205 0.80 +0.3
1,121,415 + IAI46_05205 0.85 +1.1
1,121,415 + IAI46_05205 0.85 -0.0
1,121,416 - IAI46_05205 0.85 +1.6
1,121,416 - IAI46_05205 0.85 -0.0
1,121,418 + IAI46_05205 0.85 +1.3
1,121,418 + IAI46_05205 0.85 -0.1
1,121,418 + IAI46_05205 0.85 +0.2
1,121,509 - IAI46_05205 0.88 +0.2
1,121,570 + IAI46_05205 0.90 +0.7
1,121,579 + IAI46_05205 0.90 +0.1
1,121,580 - IAI46_05205 0.90 -0.1
1,121,590 + +0.2
1,121,590 + -0.2
1,121,733 - -0.3
1,121,741 + +0.3
1,121,742 - +0.2
1,121,755 + -0.4
1,121,756 - +0.6
1,121,756 - -0.3
1,121,756 - +0.1
1,121,757 + +0.1
1,121,757 + +0.2
1,121,781 + -0.1
1,121,839 + +0.7
1,121,839 + -0.0
1,121,839 + -0.4
1,121,840 - +0.7
1,121,889 - +0.6
1,121,924 - -0.5
1,121,924 - +1.6
1,121,982 + IAI46_05210 0.11 +0.5
1,121,982 + IAI46_05210 0.11 +0.4
1,122,022 - IAI46_05210 0.33 -0.6
1,122,101 + IAI46_05210 0.77 +0.3
1,122,101 + IAI46_05210 0.77 +0.1
1,122,102 - IAI46_05210 0.77 +0.6
1,122,134 + +1.0
1,122,142 + -0.8
1,122,142 + -0.4
1,122,143 - +1.1
1,122,172 + -0.0
1,122,190 - -0.0
1,122,191 + -0.1
1,122,191 + -0.3
1,122,192 - -0.3
1,122,192 - -0.4
1,122,217 + -0.6
1,122,270 + +1.0
1,122,271 - -0.3
1,122,271 - +0.5
1,122,323 - IAI46_05215 0.15 -0.0
1,122,426 - IAI46_05215 0.34 +1.0
1,122,426 - IAI46_05215 0.34 +0.1
1,122,635 + IAI46_05215 0.73 -0.7
1,122,636 - IAI46_05215 0.73 -0.3
1,122,675 + IAI46_05215 0.80 -1.0
1,122,675 + IAI46_05215 0.80 +0.2
1,122,676 - IAI46_05215 0.80 -0.3
1,122,733 + +1.0
1,122,800 + +0.0
1,122,801 - +0.2
1,122,850 - +0.1
1,122,852 - +0.2
1,122,852 - +1.0
1,122,852 - -0.5
1,122,852 - -0.3
1,122,893 + -1.7
1,122,894 - +0.0
1,122,998 + IAI46_05220 0.18 -1.1
1,122,999 - IAI46_05220 0.18 -0.1
1,122,999 - IAI46_05220 0.18 +0.2
1,123,079 + IAI46_05220 0.39 +0.4
1,123,080 - IAI46_05220 0.39 -0.0
1,123,105 + IAI46_05220 0.46 +0.2
1,123,106 - IAI46_05220 0.46 -0.4
1,123,106 - IAI46_05220 0.46 +1.9
1,123,106 - IAI46_05220 0.46 -0.8

Or see this region's nucleotide sequence