Strain Fitness in Serratia liquefaciens MT49 around IAI46_04520

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04515 and IAI46_04520 are separated by 99 nucleotidesIAI46_04520 and IAI46_04525 are separated by 813 nucleotides IAI46_04515: IAI46_04515 - DUF1615 domain-containing protein, at 973,453 to 974,571 _04515 IAI46_04520: IAI46_04520 - alpha-keto acid decarboxylase family protein, at 974,671 to 976,347 _04520 IAI46_04525: IAI46_04525 - lipid IV(A) palmitoyltransferase PagP, at 977,161 to 977,754 _04525 Position (kb) 974 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 973.802 kb on + strand, within IAI46_04515at 973.802 kb on + strand, within IAI46_04515at 973.806 kb on + strand, within IAI46_04515at 973.806 kb on + strand, within IAI46_04515at 973.807 kb on - strand, within IAI46_04515at 973.807 kb on - strand, within IAI46_04515at 973.807 kb on - strand, within IAI46_04515at 973.828 kb on - strand, within IAI46_04515at 973.864 kb on + strand, within IAI46_04515at 973.865 kb on - strand, within IAI46_04515at 973.865 kb on - strand, within IAI46_04515at 973.923 kb on + strand, within IAI46_04515at 973.923 kb on + strand, within IAI46_04515at 973.980 kb on + strand, within IAI46_04515at 974.096 kb on - strand, within IAI46_04515at 974.096 kb on - strand, within IAI46_04515at 974.134 kb on + strand, within IAI46_04515at 974.134 kb on + strand, within IAI46_04515at 974.134 kb on + strand, within IAI46_04515at 974.134 kb on + strand, within IAI46_04515at 974.135 kb on - strand, within IAI46_04515at 974.135 kb on - strand, within IAI46_04515at 974.149 kb on + strand, within IAI46_04515at 974.149 kb on + strand, within IAI46_04515at 974.150 kb on - strand, within IAI46_04515at 974.180 kb on - strand, within IAI46_04515at 974.259 kb on + strand, within IAI46_04515at 974.259 kb on + strand, within IAI46_04515at 974.260 kb on - strand, within IAI46_04515at 974.263 kb on + strand, within IAI46_04515at 974.263 kb on + strand, within IAI46_04515at 974.264 kb on - strand, within IAI46_04515at 974.325 kb on + strand, within IAI46_04515at 974.325 kb on + strand, within IAI46_04515at 974.325 kb on + strand, within IAI46_04515at 974.326 kb on - strand, within IAI46_04515at 974.395 kb on + strand, within IAI46_04515at 974.395 kb on + strand, within IAI46_04515at 974.395 kb on + strand, within IAI46_04515at 974.395 kb on + strand, within IAI46_04515at 974.396 kb on - strand, within IAI46_04515at 974.396 kb on - strand, within IAI46_04515at 974.407 kb on + strand, within IAI46_04515at 974.407 kb on + strand, within IAI46_04515at 974.407 kb on + strand, within IAI46_04515at 974.408 kb on - strand, within IAI46_04515at 974.494 kb on - strandat 974.652 kb on - strandat 974.766 kb on + strandat 974.766 kb on + strandat 974.767 kb on - strandat 974.767 kb on - strandat 974.832 kb on + strandat 974.833 kb on - strandat 974.839 kb on + strand, within IAI46_04520at 974.868 kb on + strand, within IAI46_04520at 974.894 kb on + strand, within IAI46_04520at 974.918 kb on + strand, within IAI46_04520at 974.918 kb on + strand, within IAI46_04520at 974.919 kb on - strand, within IAI46_04520at 974.940 kb on + strand, within IAI46_04520at 974.941 kb on - strand, within IAI46_04520at 974.941 kb on - strand, within IAI46_04520at 974.942 kb on + strand, within IAI46_04520at 974.942 kb on + strand, within IAI46_04520at 974.942 kb on + strand, within IAI46_04520at 974.943 kb on - strand, within IAI46_04520at 974.943 kb on - strand, within IAI46_04520at 974.943 kb on - strand, within IAI46_04520at 974.957 kb on + strand, within IAI46_04520at 974.958 kb on - strand, within IAI46_04520at 974.970 kb on + strand, within IAI46_04520at 975.031 kb on - strand, within IAI46_04520at 975.031 kb on - strand, within IAI46_04520at 975.114 kb on + strand, within IAI46_04520at 975.114 kb on + strand, within IAI46_04520at 975.116 kb on + strand, within IAI46_04520at 975.117 kb on - strand, within IAI46_04520at 975.168 kb on + strand, within IAI46_04520at 975.168 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.217 kb on + strand, within IAI46_04520at 975.234 kb on + strand, within IAI46_04520at 975.245 kb on - strand, within IAI46_04520at 975.245 kb on - strand, within IAI46_04520at 975.245 kb on - strand, within IAI46_04520at 975.245 kb on - strand, within IAI46_04520at 975.245 kb on - strand, within IAI46_04520at 975.256 kb on + strand, within IAI46_04520at 975.260 kb on + strand, within IAI46_04520at 975.274 kb on - strand, within IAI46_04520at 975.340 kb on + strand, within IAI46_04520at 975.399 kb on - strand, within IAI46_04520at 975.535 kb on - strand, within IAI46_04520at 975.542 kb on + strand, within IAI46_04520at 975.543 kb on - strand, within IAI46_04520at 975.543 kb on - strand, within IAI46_04520at 975.543 kb on - strand, within IAI46_04520at 975.628 kb on - strand, within IAI46_04520at 975.670 kb on + strand, within IAI46_04520at 975.715 kb on - strand, within IAI46_04520at 975.715 kb on - strand, within IAI46_04520at 975.715 kb on - strand, within IAI46_04520at 975.774 kb on + strand, within IAI46_04520at 975.775 kb on - strand, within IAI46_04520at 975.775 kb on - strand, within IAI46_04520at 975.775 kb on - strand, within IAI46_04520at 975.776 kb on + strand, within IAI46_04520at 975.776 kb on + strand, within IAI46_04520at 975.776 kb on + strand, within IAI46_04520at 975.776 kb on + strand, within IAI46_04520at 975.777 kb on - strand, within IAI46_04520at 975.777 kb on - strand, within IAI46_04520at 975.777 kb on - strand, within IAI46_04520at 975.843 kb on + strand, within IAI46_04520at 975.853 kb on + strand, within IAI46_04520at 975.854 kb on - strand, within IAI46_04520at 975.860 kb on - strand, within IAI46_04520at 975.864 kb on - strand, within IAI46_04520at 975.864 kb on - strand, within IAI46_04520at 975.963 kb on + strand, within IAI46_04520at 976.086 kb on - strand, within IAI46_04520at 976.160 kb on - strand, within IAI46_04520at 976.185 kb on - strandat 976.185 kb on - strandat 976.203 kb on + strandat 976.203 kb on + strandat 976.203 kb on + strandat 976.224 kb on + strandat 976.225 kb on - strandat 976.263 kb on + strandat 976.264 kb on - strandat 976.265 kb on + strandat 976.265 kb on + strandat 976.266 kb on - strandat 976.266 kb on - strandat 976.284 kb on - strandat 976.287 kb on + strandat 976.378 kb on - strandat 976.399 kb on - strandat 976.399 kb on - strandat 976.420 kb on + strandat 976.420 kb on + strandat 976.487 kb on + strandat 976.552 kb on + strandat 976.553 kb on - strandat 976.553 kb on - strandat 976.735 kb on + strandat 976.735 kb on + strandat 976.792 kb on + strandat 976.792 kb on + strandat 976.793 kb on - strandat 976.807 kb on - strandat 976.882 kb on + strandat 976.909 kb on + strandat 976.952 kb on + strandat 976.952 kb on + strandat 976.953 kb on - strandat 976.962 kb on + strandat 976.981 kb on + strandat 977.072 kb on - strandat 977.072 kb on - strandat 977.093 kb on + strandat 977.094 kb on - strandat 977.098 kb on + strandat 977.098 kb on + strandat 977.099 kb on - strandat 977.150 kb on - strandat 977.207 kb on + strandat 977.207 kb on + strandat 977.227 kb on + strand, within IAI46_04525at 977.227 kb on + strand, within IAI46_04525at 977.227 kb on + strand, within IAI46_04525at 977.344 kb on + strand, within IAI46_04525at 977.344 kb on + strand, within IAI46_04525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
973,802 + IAI46_04515 0.31 +0.1
973,802 + IAI46_04515 0.31 -0.6
973,806 + IAI46_04515 0.32 +0.6
973,806 + IAI46_04515 0.32 +1.0
973,807 - IAI46_04515 0.32 -0.1
973,807 - IAI46_04515 0.32 +0.1
973,807 - IAI46_04515 0.32 -1.7
973,828 - IAI46_04515 0.34 -0.2
973,864 + IAI46_04515 0.37 -1.5
973,865 - IAI46_04515 0.37 -0.2
973,865 - IAI46_04515 0.37 -0.8
973,923 + IAI46_04515 0.42 +0.9
973,923 + IAI46_04515 0.42 -0.5
973,980 + IAI46_04515 0.47 +0.6
974,096 - IAI46_04515 0.57 +0.1
974,096 - IAI46_04515 0.57 -0.5
974,134 + IAI46_04515 0.61 +0.3
974,134 + IAI46_04515 0.61 +0.6
974,134 + IAI46_04515 0.61 +0.5
974,134 + IAI46_04515 0.61 -0.1
974,135 - IAI46_04515 0.61 -0.3
974,135 - IAI46_04515 0.61 +0.5
974,149 + IAI46_04515 0.62 +0.6
974,149 + IAI46_04515 0.62 -1.1
974,150 - IAI46_04515 0.62 -0.6
974,180 - IAI46_04515 0.65 +0.3
974,259 + IAI46_04515 0.72 -1.4
974,259 + IAI46_04515 0.72 +0.2
974,260 - IAI46_04515 0.72 +1.2
974,263 + IAI46_04515 0.72 +0.7
974,263 + IAI46_04515 0.72 -0.2
974,264 - IAI46_04515 0.72 -2.4
974,325 + IAI46_04515 0.78 -0.3
974,325 + IAI46_04515 0.78 +0.3
974,325 + IAI46_04515 0.78 +0.2
974,326 - IAI46_04515 0.78 +0.5
974,395 + IAI46_04515 0.84 -0.3
974,395 + IAI46_04515 0.84 +0.3
974,395 + IAI46_04515 0.84 +0.2
974,395 + IAI46_04515 0.84 +2.2
974,396 - IAI46_04515 0.84 +0.6
974,396 - IAI46_04515 0.84 +0.2
974,407 + IAI46_04515 0.85 -0.2
974,407 + IAI46_04515 0.85 -0.4
974,407 + IAI46_04515 0.85 +0.3
974,408 - IAI46_04515 0.85 -1.0
974,494 - -0.1
974,652 - -0.9
974,766 + -1.1
974,766 + +0.7
974,767 - -0.2
974,767 - -1.3
974,832 + +0.4
974,833 - -0.4
974,839 + IAI46_04520 0.10 +1.1
974,868 + IAI46_04520 0.12 +1.7
974,894 + IAI46_04520 0.13 -0.6
974,918 + IAI46_04520 0.15 +0.7
974,918 + IAI46_04520 0.15 +0.5
974,919 - IAI46_04520 0.15 +0.3
974,940 + IAI46_04520 0.16 -0.2
974,941 - IAI46_04520 0.16 -0.1
974,941 - IAI46_04520 0.16 -0.2
974,942 + IAI46_04520 0.16 +0.6
974,942 + IAI46_04520 0.16 -0.7
974,942 + IAI46_04520 0.16 +0.2
974,943 - IAI46_04520 0.16 +0.3
974,943 - IAI46_04520 0.16 +2.0
974,943 - IAI46_04520 0.16 -0.0
974,957 + IAI46_04520 0.17 -0.1
974,958 - IAI46_04520 0.17 +0.3
974,970 + IAI46_04520 0.18 +0.3
975,031 - IAI46_04520 0.21 +0.6
975,031 - IAI46_04520 0.21 -0.4
975,114 + IAI46_04520 0.26 +0.6
975,114 + IAI46_04520 0.26 -0.3
975,116 + IAI46_04520 0.27 +0.6
975,117 - IAI46_04520 0.27 -0.1
975,168 + IAI46_04520 0.30 +0.3
975,168 + IAI46_04520 0.30 -0.3
975,217 + IAI46_04520 0.33 +0.6
975,217 + IAI46_04520 0.33 +0.1
975,217 + IAI46_04520 0.33 -1.1
975,217 + IAI46_04520 0.33 +0.0
975,217 + IAI46_04520 0.33 -0.4
975,217 + IAI46_04520 0.33 -2.0
975,234 + IAI46_04520 0.34 +0.4
975,245 - IAI46_04520 0.34 +0.1
975,245 - IAI46_04520 0.34 -0.3
975,245 - IAI46_04520 0.34 +0.3
975,245 - IAI46_04520 0.34 +0.7
975,245 - IAI46_04520 0.34 -0.0
975,256 + IAI46_04520 0.35 +0.2
975,260 + IAI46_04520 0.35 +0.9
975,274 - IAI46_04520 0.36 -0.3
975,340 + IAI46_04520 0.40 -0.2
975,399 - IAI46_04520 0.43 +1.1
975,535 - IAI46_04520 0.52 -0.3
975,542 + IAI46_04520 0.52 -0.1
975,543 - IAI46_04520 0.52 +0.4
975,543 - IAI46_04520 0.52 +0.1
975,543 - IAI46_04520 0.52 -0.4
975,628 - IAI46_04520 0.57 +0.2
975,670 + IAI46_04520 0.60 -0.1
975,715 - IAI46_04520 0.62 +0.3
975,715 - IAI46_04520 0.62 -0.3
975,715 - IAI46_04520 0.62 -0.2
975,774 + IAI46_04520 0.66 +1.0
975,775 - IAI46_04520 0.66 +0.2
975,775 - IAI46_04520 0.66 +0.3
975,775 - IAI46_04520 0.66 -1.6
975,776 + IAI46_04520 0.66 +0.0
975,776 + IAI46_04520 0.66 -0.5
975,776 + IAI46_04520 0.66 +0.1
975,776 + IAI46_04520 0.66 +0.4
975,777 - IAI46_04520 0.66 +0.0
975,777 - IAI46_04520 0.66 +0.3
975,777 - IAI46_04520 0.66 +0.3
975,843 + IAI46_04520 0.70 +0.8
975,853 + IAI46_04520 0.70 -0.1
975,854 - IAI46_04520 0.71 -0.3
975,860 - IAI46_04520 0.71 +0.4
975,864 - IAI46_04520 0.71 +1.6
975,864 - IAI46_04520 0.71 +0.5
975,963 + IAI46_04520 0.77 +0.5
976,086 - IAI46_04520 0.84 +0.8
976,160 - IAI46_04520 0.89 +0.8
976,185 - +0.4
976,185 - +0.2
976,203 + -0.0
976,203 + -0.0
976,203 + +0.3
976,224 + +0.4
976,225 - +0.2
976,263 + +0.3
976,264 - +0.5
976,265 + +0.2
976,265 + +0.6
976,266 - +0.9
976,266 - +0.7
976,284 - +0.5
976,287 + +1.2
976,378 - -0.3
976,399 - -0.1
976,399 - +0.0
976,420 + +0.6
976,420 + +0.5
976,487 + -0.2
976,552 + +0.5
976,553 - +0.3
976,553 - -0.1
976,735 + +0.5
976,735 + +0.3
976,792 + -0.6
976,792 + +0.8
976,793 - +0.0
976,807 - -0.2
976,882 + -0.3
976,909 + +0.2
976,952 + +0.2
976,952 + +0.3
976,953 - -0.6
976,962 + +0.1
976,981 + -0.8
977,072 - -0.5
977,072 - +0.3
977,093 + +0.7
977,094 - +0.1
977,098 + -0.0
977,098 + +0.1
977,099 - +0.2
977,150 - +0.6
977,207 + +1.4
977,207 + -0.3
977,227 + IAI46_04525 0.11 +0.2
977,227 + IAI46_04525 0.11 +0.9
977,227 + IAI46_04525 0.11 -0.4
977,344 + IAI46_04525 0.31 -1.2
977,344 + IAI46_04525 0.31 +0.4

Or see this region's nucleotide sequence