Strain Fitness in Serratia liquefaciens MT49 around IAI46_04350

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04340 and IAI46_04345 are separated by 97 nucleotidesIAI46_04345 and IAI46_04350 overlap by 69 nucleotidesIAI46_04350 and IAI46_04355 are separated by 255 nucleotidesIAI46_04355 and IAI46_04360 are separated by 5 nucleotides IAI46_04340: IAI46_04340 - D-sedoheptulose 7-phosphate isomerase, at 931,411 to 931,992 _04340 IAI46_04345: IAI46_04345 - class II glutamine amidotransferase, at 932,090 to 932,896 _04345 IAI46_04350: IAI46_04350 - murein L,D-transpeptidase, at 932,828 to 933,598 _04350 IAI46_04355: IAI46_04355 - hypothetical protein, at 933,854 to 934,171 _04355 IAI46_04360: IAI46_04360 - Na(+)-translocating NADH-quinone reductase subunit A, at 934,177 to 935,526 _04360 Position (kb) 932 933 934Strain fitness (log2 ratio) -2 -1 0 1 2at 932.023 kb on + strandat 932.024 kb on - strandat 932.024 kb on - strandat 932.024 kb on - strandat 932.122 kb on - strandat 932.132 kb on - strandat 932.185 kb on + strand, within IAI46_04345at 932.185 kb on + strand, within IAI46_04345at 932.186 kb on - strand, within IAI46_04345at 932.203 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.211 kb on - strand, within IAI46_04345at 932.236 kb on + strand, within IAI46_04345at 932.236 kb on + strand, within IAI46_04345at 932.360 kb on - strand, within IAI46_04345at 932.392 kb on + strand, within IAI46_04345at 932.392 kb on + strand, within IAI46_04345at 932.402 kb on + strand, within IAI46_04345at 932.402 kb on + strand, within IAI46_04345at 932.483 kb on + strand, within IAI46_04345at 932.523 kb on - strand, within IAI46_04345at 932.530 kb on + strand, within IAI46_04345at 932.562 kb on - strand, within IAI46_04345at 932.564 kb on - strand, within IAI46_04345at 932.642 kb on + strand, within IAI46_04345at 932.643 kb on - strand, within IAI46_04345at 932.643 kb on - strand, within IAI46_04345at 932.660 kb on + strand, within IAI46_04345at 932.696 kb on - strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.747 kb on - strand, within IAI46_04345at 932.747 kb on - strand, within IAI46_04345at 932.829 kb on + strandat 932.901 kb on + strandat 932.901 kb on + strandat 932.902 kb on - strandat 932.946 kb on + strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.997 kb on + strand, within IAI46_04350at 932.997 kb on + strand, within IAI46_04350at 932.997 kb on + strand, within IAI46_04350at 932.998 kb on - strand, within IAI46_04350at 932.998 kb on - strand, within IAI46_04350at 932.998 kb on - strand, within IAI46_04350at 932.998 kb on - strand, within IAI46_04350at 932.998 kb on - strand, within IAI46_04350at 933.003 kb on + strand, within IAI46_04350at 933.037 kb on - strand, within IAI46_04350at 933.037 kb on - strand, within IAI46_04350at 933.037 kb on - strand, within IAI46_04350at 933.037 kb on - strand, within IAI46_04350at 933.087 kb on + strand, within IAI46_04350at 933.088 kb on - strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.091 kb on + strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.092 kb on - strand, within IAI46_04350at 933.097 kb on + strand, within IAI46_04350at 933.097 kb on + strand, within IAI46_04350at 933.117 kb on + strand, within IAI46_04350at 933.117 kb on + strand, within IAI46_04350at 933.139 kb on - strand, within IAI46_04350at 933.144 kb on + strand, within IAI46_04350at 933.158 kb on - strand, within IAI46_04350at 933.158 kb on - strand, within IAI46_04350at 933.158 kb on - strand, within IAI46_04350at 933.158 kb on - strand, within IAI46_04350at 933.159 kb on + strand, within IAI46_04350at 933.159 kb on + strand, within IAI46_04350at 933.159 kb on + strand, within IAI46_04350at 933.159 kb on + strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.160 kb on - strand, within IAI46_04350at 933.178 kb on - strand, within IAI46_04350at 933.216 kb on + strand, within IAI46_04350at 933.217 kb on - strand, within IAI46_04350at 933.229 kb on - strand, within IAI46_04350at 933.242 kb on - strand, within IAI46_04350at 933.269 kb on + strand, within IAI46_04350at 933.269 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.283 kb on - strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.287 kb on - strand, within IAI46_04350at 933.287 kb on - strand, within IAI46_04350at 933.319 kb on + strand, within IAI46_04350at 933.320 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.465 kb on - strand, within IAI46_04350at 933.472 kb on + strand, within IAI46_04350at 933.473 kb on - strand, within IAI46_04350at 933.474 kb on + strand, within IAI46_04350at 933.475 kb on - strand, within IAI46_04350at 933.491 kb on + strand, within IAI46_04350at 933.503 kb on - strand, within IAI46_04350at 933.600 kb on - strandat 933.602 kb on + strandat 933.602 kb on + strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.614 kb on + strandat 933.615 kb on - strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.635 kb on + strandat 933.635 kb on + strandat 933.660 kb on + strandat 933.660 kb on + strandat 933.669 kb on - strandat 933.677 kb on - strandat 933.693 kb on - strandat 933.710 kb on + strandat 933.711 kb on - strandat 933.727 kb on + strandat 933.729 kb on + strandat 933.790 kb on + strandat 933.807 kb on - strandat 933.866 kb on - strandat 933.883 kb on + strandat 933.894 kb on + strand, within IAI46_04355at 933.895 kb on - strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.922 kb on - strand, within IAI46_04355at 933.962 kb on - strand, within IAI46_04355at 933.962 kb on - strand, within IAI46_04355at 934.003 kb on - strand, within IAI46_04355at 934.076 kb on - strand, within IAI46_04355at 934.091 kb on - strand, within IAI46_04355at 934.091 kb on - strand, within IAI46_04355at 934.140 kb on + strandat 934.168 kb on - strandat 934.169 kb on + strandat 934.170 kb on - strandat 934.170 kb on - strandat 934.176 kb on + strandat 934.183 kb on - strandat 934.283 kb on - strandat 934.356 kb on + strand, within IAI46_04360at 934.374 kb on - strand, within IAI46_04360at 934.406 kb on + strand, within IAI46_04360at 934.407 kb on - strand, within IAI46_04360

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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932,023 + +0.3
932,024 - -0.0
932,024 - -0.3
932,024 - -0.2
932,122 - -0.2
932,132 - +0.8
932,185 + IAI46_04345 0.12 +0.0
932,185 + IAI46_04345 0.12 +1.1
932,186 - IAI46_04345 0.12 -0.5
932,203 + IAI46_04345 0.14 +0.9
932,210 + IAI46_04345 0.15 +0.0
932,210 + IAI46_04345 0.15 +1.2
932,210 + IAI46_04345 0.15 -0.3
932,210 + IAI46_04345 0.15 +0.2
932,210 + IAI46_04345 0.15 +0.1
932,210 + IAI46_04345 0.15 -0.9
932,211 - IAI46_04345 0.15 +0.2
932,236 + IAI46_04345 0.18 +1.6
932,236 + IAI46_04345 0.18 +0.2
932,360 - IAI46_04345 0.33 +0.4
932,392 + IAI46_04345 0.37 -0.0
932,392 + IAI46_04345 0.37 +0.2
932,402 + IAI46_04345 0.39 -0.2
932,402 + IAI46_04345 0.39 -0.3
932,483 + IAI46_04345 0.49 -0.2
932,523 - IAI46_04345 0.54 -0.1
932,530 + IAI46_04345 0.55 +0.4
932,562 - IAI46_04345 0.58 +0.8
932,564 - IAI46_04345 0.59 -0.3
932,642 + IAI46_04345 0.68 +0.6
932,643 - IAI46_04345 0.69 +0.3
932,643 - IAI46_04345 0.69 -0.3
932,660 + IAI46_04345 0.71 -0.1
932,696 - IAI46_04345 0.75 +1.3
932,746 + IAI46_04345 0.81 -1.1
932,746 + IAI46_04345 0.81 -0.0
932,746 + IAI46_04345 0.81 +0.8
932,746 + IAI46_04345 0.81 +0.3
932,747 - IAI46_04345 0.81 -0.3
932,747 - IAI46_04345 0.81 +1.7
932,829 + -1.6
932,901 + -0.7
932,901 + +1.2
932,902 - -2.3
932,946 + IAI46_04350 0.15 +0.2
932,947 - IAI46_04350 0.15 -0.1
932,947 - IAI46_04350 0.15 -0.0
932,947 - IAI46_04350 0.15 +0.3
932,947 - IAI46_04350 0.15 -0.3
932,997 + IAI46_04350 0.22 +0.3
932,997 + IAI46_04350 0.22 +0.2
932,997 + IAI46_04350 0.22 -0.2
932,998 - IAI46_04350 0.22 -0.2
932,998 - IAI46_04350 0.22 +0.1
932,998 - IAI46_04350 0.22 -0.2
932,998 - IAI46_04350 0.22 +1.2
932,998 - IAI46_04350 0.22 +0.7
933,003 + IAI46_04350 0.23 +0.2
933,037 - IAI46_04350 0.27 -0.5
933,037 - IAI46_04350 0.27 +2.0
933,037 - IAI46_04350 0.27 +0.3
933,037 - IAI46_04350 0.27 -0.6
933,087 + IAI46_04350 0.34 -0.3
933,088 - IAI46_04350 0.34 -0.2
933,091 + IAI46_04350 0.34 +0.2
933,091 + IAI46_04350 0.34 +0.0
933,091 + IAI46_04350 0.34 +0.7
933,091 + IAI46_04350 0.34 -0.6
933,091 + IAI46_04350 0.34 -0.8
933,091 + IAI46_04350 0.34 -0.9
933,092 - IAI46_04350 0.34 -0.2
933,092 - IAI46_04350 0.34 -0.7
933,092 - IAI46_04350 0.34 -2.2
933,092 - IAI46_04350 0.34 -0.2
933,092 - IAI46_04350 0.34 +0.0
933,092 - IAI46_04350 0.34 -0.3
933,092 - IAI46_04350 0.34 +0.2
933,092 - IAI46_04350 0.34 -0.3
933,092 - IAI46_04350 0.34 +0.7
933,092 - IAI46_04350 0.34 +0.7
933,097 + IAI46_04350 0.35 -0.1
933,097 + IAI46_04350 0.35 +0.8
933,117 + IAI46_04350 0.37 +0.5
933,117 + IAI46_04350 0.37 +0.4
933,139 - IAI46_04350 0.40 +0.2
933,144 + IAI46_04350 0.41 +0.4
933,158 - IAI46_04350 0.43 +0.5
933,158 - IAI46_04350 0.43 +0.7
933,158 - IAI46_04350 0.43 +1.5
933,158 - IAI46_04350 0.43 +0.7
933,159 + IAI46_04350 0.43 -0.0
933,159 + IAI46_04350 0.43 -0.6
933,159 + IAI46_04350 0.43 +0.2
933,159 + IAI46_04350 0.43 +0.8
933,160 - IAI46_04350 0.43 -0.2
933,160 - IAI46_04350 0.43 -0.9
933,160 - IAI46_04350 0.43 -0.3
933,160 - IAI46_04350 0.43 +0.4
933,160 - IAI46_04350 0.43 -0.1
933,160 - IAI46_04350 0.43 -0.1
933,160 - IAI46_04350 0.43 +0.5
933,160 - IAI46_04350 0.43 -1.0
933,178 - IAI46_04350 0.45 +1.1
933,216 + IAI46_04350 0.50 +0.0
933,217 - IAI46_04350 0.50 +0.4
933,229 - IAI46_04350 0.52 +0.3
933,242 - IAI46_04350 0.54 +0.6
933,269 + IAI46_04350 0.57 +0.2
933,269 + IAI46_04350 0.57 -1.6
933,282 + IAI46_04350 0.59 +0.5
933,282 + IAI46_04350 0.59 -1.0
933,282 + IAI46_04350 0.59 +0.0
933,282 + IAI46_04350 0.59 +1.1
933,282 + IAI46_04350 0.59 +0.1
933,283 - IAI46_04350 0.59 +0.7
933,286 + IAI46_04350 0.59 -0.1
933,286 + IAI46_04350 0.59 -0.0
933,286 + IAI46_04350 0.59 +0.1
933,287 - IAI46_04350 0.60 -0.1
933,287 - IAI46_04350 0.60 +0.5
933,319 + IAI46_04350 0.64 -0.2
933,320 - IAI46_04350 0.64 +0.4
933,436 - IAI46_04350 0.79 -0.2
933,436 - IAI46_04350 0.79 -0.3
933,436 - IAI46_04350 0.79 -0.3
933,436 - IAI46_04350 0.79 +0.3
933,436 - IAI46_04350 0.79 +0.1
933,465 - IAI46_04350 0.83 +1.5
933,472 + IAI46_04350 0.84 +0.1
933,473 - IAI46_04350 0.84 +0.1
933,474 + IAI46_04350 0.84 +0.3
933,475 - IAI46_04350 0.84 +0.2
933,491 + IAI46_04350 0.86 +0.5
933,503 - IAI46_04350 0.88 +0.5
933,600 - +0.1
933,602 + -0.3
933,602 + +1.1
933,613 - -0.0
933,613 - +0.7
933,613 - +0.6
933,613 - +0.2
933,614 + -0.8
933,615 - +1.3
933,618 + -0.5
933,618 + -1.1
933,618 + +0.2
933,618 + -0.3
933,635 + -0.0
933,635 + +0.0
933,660 + +1.8
933,660 + +0.4
933,669 - -2.1
933,677 - +0.2
933,693 - -0.7
933,710 + -0.1
933,711 - +0.6
933,727 + -0.1
933,729 + +0.6
933,790 + -0.9
933,807 - +0.5
933,866 - -0.0
933,883 + +0.1
933,894 + IAI46_04355 0.13 +0.9
933,895 - IAI46_04355 0.13 +1.0
933,921 + IAI46_04355 0.21 -0.0
933,921 + IAI46_04355 0.21 -0.1
933,921 + IAI46_04355 0.21 +2.1
933,922 - IAI46_04355 0.21 +0.1
933,962 - IAI46_04355 0.34 +0.7
933,962 - IAI46_04355 0.34 -0.7
934,003 - IAI46_04355 0.47 +0.3
934,076 - IAI46_04355 0.70 -0.3
934,091 - IAI46_04355 0.75 +0.5
934,091 - IAI46_04355 0.75 -0.1
934,140 + -0.8
934,168 - +1.5
934,169 + +2.0
934,170 - +0.2
934,170 - -0.0
934,176 + +0.2
934,183 - +0.5
934,283 - +0.2
934,356 + IAI46_04360 0.13 +0.7
934,374 - IAI46_04360 0.15 -0.1
934,406 + IAI46_04360 0.17 +0.3
934,407 - IAI46_04360 0.17 +1.0

Or see this region's nucleotide sequence