Strain Fitness in Serratia liquefaciens MT49 around IAI46_04255

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04250 and IAI46_04255 are separated by 12 nucleotidesIAI46_04255 and IAI46_04260 overlap by 1 nucleotidesIAI46_04260 and IAI46_04265 overlap by 20 nucleotides IAI46_04250: IAI46_04250 - transporter substrate-binding domain-containing protein, at 914,206 to 914,997 _04250 IAI46_04255: IAI46_04255 - amino acid ABC transporter permease, at 915,010 to 915,675 _04255 IAI46_04260: IAI46_04260 - amino acid ABC transporter permease, at 915,675 to 916,331 _04260 IAI46_04265: IAI46_04265 - amino acid ABC transporter ATP-binding protein, at 916,312 to 917,055 _04265 Position (kb) 915 916Strain fitness (log2 ratio) -2 -1 0 1at 914.044 kb on + strandat 914.094 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.288 kb on + strand, within IAI46_04250at 914.427 kb on + strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.469 kb on + strand, within IAI46_04250at 914.471 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.482 kb on - strand, within IAI46_04250at 914.710 kb on + strand, within IAI46_04250at 914.740 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.934 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.047 kb on - strandat 915.075 kb on - strandat 915.187 kb on + strand, within IAI46_04255at 915.187 kb on + strand, within IAI46_04255at 915.188 kb on - strand, within IAI46_04255at 915.306 kb on + strand, within IAI46_04255at 915.334 kb on - strand, within IAI46_04255at 915.335 kb on + strand, within IAI46_04255at 915.397 kb on - strand, within IAI46_04255at 915.452 kb on - strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.602 kb on - strand, within IAI46_04255at 915.962 kb on + strand, within IAI46_04260at 915.963 kb on - strand, within IAI46_04260at 915.983 kb on + strand, within IAI46_04260at 915.984 kb on - strand, within IAI46_04260at 916.201 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.284 kb on + strandat 916.293 kb on + strandat 916.294 kb on - strandat 916.329 kb on + strandat 916.330 kb on - strandat 916.580 kb on + strand, within IAI46_04265at 916.581 kb on - strand, within IAI46_04265

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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914,044 + -1.9
914,094 + -0.1
914,205 + -0.3
914,205 + -0.0
914,205 + +1.1
914,205 + +0.9
914,205 + +0.0
914,206 - +0.4
914,206 - +0.6
914,206 - -0.6
914,206 - -0.8
914,206 - +1.0
914,288 + IAI46_04250 0.10 +0.9
914,427 + IAI46_04250 0.28 +0.3
914,428 - IAI46_04250 0.28 -0.3
914,428 - IAI46_04250 0.28 +0.5
914,428 - IAI46_04250 0.28 +0.4
914,469 + IAI46_04250 0.33 +0.3
914,471 - IAI46_04250 0.33 -0.4
914,475 - IAI46_04250 0.34 -0.4
914,475 - IAI46_04250 0.34 -0.1
914,482 - IAI46_04250 0.35 -0.4
914,710 + IAI46_04250 0.64 +0.0
914,740 + IAI46_04250 0.67 -0.0
914,761 + IAI46_04250 0.70 +0.8
914,761 + IAI46_04250 0.70 +0.7
914,761 + IAI46_04250 0.70 -0.2
914,761 + IAI46_04250 0.70 -0.1
914,762 - IAI46_04250 0.70 -0.0
914,762 - IAI46_04250 0.70 -1.6
914,762 - IAI46_04250 0.70 +0.6
914,762 - IAI46_04250 0.70 -0.8
914,762 - IAI46_04250 0.70 -0.1
914,835 + IAI46_04250 0.79 +0.1
914,835 + IAI46_04250 0.79 -0.3
914,835 + IAI46_04250 0.79 +0.1
914,836 - IAI46_04250 0.80 -0.4
914,836 - IAI46_04250 0.80 +0.4
914,934 + -0.6
915,016 + +0.5
915,016 + +1.0
915,016 + +0.0
915,017 - +0.6
915,017 - +0.1
915,017 - +0.2
915,047 - +0.1
915,075 - +0.1
915,187 + IAI46_04255 0.27 +0.7
915,187 + IAI46_04255 0.27 +0.4
915,188 - IAI46_04255 0.27 +0.6
915,306 + IAI46_04255 0.44 -0.0
915,334 - IAI46_04255 0.49 -0.1
915,335 + IAI46_04255 0.49 -0.0
915,397 - IAI46_04255 0.58 +1.0
915,452 - IAI46_04255 0.66 +0.5
915,580 + IAI46_04255 0.86 -1.0
915,580 + IAI46_04255 0.86 +0.5
915,580 + IAI46_04255 0.86 +0.2
915,580 + IAI46_04255 0.86 +0.1
915,585 - IAI46_04255 0.86 -0.5
915,585 - IAI46_04255 0.86 -0.7
915,602 - IAI46_04255 0.89 +0.2
915,962 + IAI46_04260 0.44 +0.6
915,963 - IAI46_04260 0.44 -0.2
915,983 + IAI46_04260 0.47 +0.8
915,984 - IAI46_04260 0.47 +0.4
916,201 + IAI46_04260 0.80 +0.0
916,215 + IAI46_04260 0.82 -0.0
916,215 + IAI46_04260 0.82 +0.8
916,216 - IAI46_04260 0.82 +0.3
916,216 - IAI46_04260 0.82 +0.7
916,226 + IAI46_04260 0.84 +0.2
916,226 + IAI46_04260 0.84 -0.8
916,284 + +0.5
916,293 + -0.6
916,294 - +0.5
916,329 + -0.1
916,330 - -1.3
916,580 + IAI46_04265 0.36 -0.8
916,581 - IAI46_04265 0.36 +0.8

Or see this region's nucleotide sequence