Strain Fitness in Serratia liquefaciens MT49 around IAI46_04030

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04020 and IAI46_04025 are separated by 188 nucleotidesIAI46_04025 and IAI46_04030 are separated by 284 nucleotidesIAI46_04030 and IAI46_04035 overlap by 1 nucleotidesIAI46_04035 and IAI46_04040 are separated by 4 nucleotides IAI46_04020: IAI46_04020 - tRNA-Asp, at 871,268 to 871,344 _04020 IAI46_04025: IAI46_04025 - hypothetical protein, at 871,533 to 871,922 _04025 IAI46_04030: IAI46_04030 - beta-ketoacyl synthase chain length factor, at 872,207 to 872,929 _04030 IAI46_04035: IAI46_04035 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 872,929 to 873,747 _04035 IAI46_04040: IAI46_04040 - acyl carrier protein, at 873,752 to 874,012 _04040 Position (kb) 872 873Strain fitness (log2 ratio) -2 -1 0 1 2at 871.347 kb on + strandat 871.367 kb on + strandat 871.387 kb on + strandat 871.452 kb on + strandat 871.456 kb on + strandat 871.635 kb on - strand, within IAI46_04025at 871.638 kb on - strand, within IAI46_04025at 871.649 kb on + strand, within IAI46_04025at 871.651 kb on + strand, within IAI46_04025at 871.808 kb on + strand, within IAI46_04025at 871.808 kb on + strand, within IAI46_04025at 871.809 kb on - strand, within IAI46_04025at 871.809 kb on - strand, within IAI46_04025at 871.922 kb on + strandat 871.961 kb on - strandat 871.966 kb on + strandat 871.967 kb on - strandat 871.978 kb on + strandat 871.979 kb on - strandat 871.982 kb on + strandat 871.982 kb on + strandat 871.983 kb on - strandat 871.988 kb on + strandat 872.029 kb on - strandat 872.049 kb on + strandat 872.049 kb on + strandat 872.093 kb on - strandat 872.158 kb on - strandat 872.162 kb on - strandat 872.162 kb on - strandat 872.163 kb on + strandat 872.225 kb on - strandat 872.225 kb on - strandat 872.225 kb on - strandat 872.225 kb on - strandat 872.227 kb on - strandat 872.391 kb on + strand, within IAI46_04030at 872.391 kb on + strand, within IAI46_04030at 872.391 kb on + strand, within IAI46_04030at 872.392 kb on - strand, within IAI46_04030at 872.431 kb on + strand, within IAI46_04030at 872.542 kb on + strand, within IAI46_04030at 872.542 kb on + strand, within IAI46_04030at 872.569 kb on + strand, within IAI46_04030at 872.569 kb on + strand, within IAI46_04030at 872.570 kb on - strand, within IAI46_04030at 872.655 kb on + strand, within IAI46_04030at 872.655 kb on + strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.656 kb on - strand, within IAI46_04030at 872.659 kb on + strand, within IAI46_04030at 872.683 kb on - strand, within IAI46_04030at 872.683 kb on - strand, within IAI46_04030at 872.685 kb on + strand, within IAI46_04030at 872.685 kb on + strand, within IAI46_04030at 872.686 kb on - strand, within IAI46_04030at 872.717 kb on + strand, within IAI46_04030at 872.718 kb on - strand, within IAI46_04030at 872.740 kb on + strand, within IAI46_04030at 872.846 kb on - strand, within IAI46_04030at 872.955 kb on + strandat 872.979 kb on + strandat 872.980 kb on - strandat 872.999 kb on + strandat 873.000 kb on - strandat 873.000 kb on - strandat 873.003 kb on + strandat 873.045 kb on - strand, within IAI46_04035at 873.174 kb on - strand, within IAI46_04035at 873.259 kb on + strand, within IAI46_04035at 873.260 kb on - strand, within IAI46_04035at 873.260 kb on - strand, within IAI46_04035at 873.299 kb on + strand, within IAI46_04035at 873.299 kb on + strand, within IAI46_04035at 873.382 kb on - strand, within IAI46_04035at 873.382 kb on - strand, within IAI46_04035at 873.383 kb on + strand, within IAI46_04035at 873.383 kb on + strand, within IAI46_04035at 873.384 kb on - strand, within IAI46_04035at 873.519 kb on + strand, within IAI46_04035at 873.519 kb on + strand, within IAI46_04035at 873.580 kb on + strand, within IAI46_04035at 873.580 kb on + strand, within IAI46_04035at 873.582 kb on + strand, within IAI46_04035at 873.583 kb on - strand, within IAI46_04035at 873.627 kb on + strand, within IAI46_04035at 873.628 kb on - strand, within IAI46_04035at 873.628 kb on - strand, within IAI46_04035at 873.692 kb on + strandat 873.731 kb on + strandat 873.732 kb on - strandat 873.735 kb on + strandat 873.735 kb on + strandat 873.759 kb on + strandat 873.793 kb on + strand, within IAI46_04040at 873.794 kb on - strand, within IAI46_04040at 873.811 kb on + strand, within IAI46_04040at 873.812 kb on - strand, within IAI46_04040

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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871,347 + +0.8
871,367 + +1.8
871,387 + -0.5
871,452 + -0.5
871,456 + -0.5
871,635 - IAI46_04025 0.26 +0.0
871,638 - IAI46_04025 0.27 -0.4
871,649 + IAI46_04025 0.30 -1.7
871,651 + IAI46_04025 0.30 -0.1
871,808 + IAI46_04025 0.71 +0.1
871,808 + IAI46_04025 0.71 -0.0
871,809 - IAI46_04025 0.71 -0.6
871,809 - IAI46_04025 0.71 +0.0
871,922 + +0.3
871,961 - -0.1
871,966 + -0.1
871,967 - -0.8
871,978 + -2.3
871,979 - -0.1
871,982 + -0.7
871,982 + -0.2
871,983 - +0.5
871,988 + +0.3
872,029 - -1.1
872,049 + +0.3
872,049 + -0.7
872,093 - +0.3
872,158 - -0.0
872,162 - -0.6
872,162 - +0.6
872,163 + +0.2
872,225 - -0.2
872,225 - +0.8
872,225 - -0.2
872,225 - +0.3
872,227 - +1.4
872,391 + IAI46_04030 0.25 -0.2
872,391 + IAI46_04030 0.25 -0.9
872,391 + IAI46_04030 0.25 +0.8
872,392 - IAI46_04030 0.26 -0.4
872,431 + IAI46_04030 0.31 +0.0
872,542 + IAI46_04030 0.46 -0.4
872,542 + IAI46_04030 0.46 +0.7
872,569 + IAI46_04030 0.50 -0.2
872,569 + IAI46_04030 0.50 -0.6
872,570 - IAI46_04030 0.50 -0.4
872,655 + IAI46_04030 0.62 -1.2
872,655 + IAI46_04030 0.62 +0.3
872,656 - IAI46_04030 0.62 -0.3
872,656 - IAI46_04030 0.62 +1.5
872,656 - IAI46_04030 0.62 +1.7
872,656 - IAI46_04030 0.62 -0.4
872,656 - IAI46_04030 0.62 +0.8
872,656 - IAI46_04030 0.62 +0.3
872,659 + IAI46_04030 0.63 +0.6
872,683 - IAI46_04030 0.66 +0.3
872,683 - IAI46_04030 0.66 +0.3
872,685 + IAI46_04030 0.66 -0.1
872,685 + IAI46_04030 0.66 -0.8
872,686 - IAI46_04030 0.66 +0.7
872,717 + IAI46_04030 0.71 +0.0
872,718 - IAI46_04030 0.71 +0.4
872,740 + IAI46_04030 0.74 -0.0
872,846 - IAI46_04030 0.88 +0.1
872,955 + -1.6
872,979 + -0.7
872,980 - -0.0
872,999 + +0.6
873,000 - +0.2
873,000 - -0.9
873,003 + +2.0
873,045 - IAI46_04035 0.14 +0.2
873,174 - IAI46_04035 0.30 -0.1
873,259 + IAI46_04035 0.40 -0.9
873,260 - IAI46_04035 0.40 -0.2
873,260 - IAI46_04035 0.40 -0.7
873,299 + IAI46_04035 0.45 +1.3
873,299 + IAI46_04035 0.45 +0.5
873,382 - IAI46_04035 0.55 -0.9
873,382 - IAI46_04035 0.55 -0.3
873,383 + IAI46_04035 0.55 -0.3
873,383 + IAI46_04035 0.55 -0.9
873,384 - IAI46_04035 0.56 +0.2
873,519 + IAI46_04035 0.72 -0.2
873,519 + IAI46_04035 0.72 -0.7
873,580 + IAI46_04035 0.79 +0.1
873,580 + IAI46_04035 0.79 +0.8
873,582 + IAI46_04035 0.80 +0.7
873,583 - IAI46_04035 0.80 -0.6
873,627 + IAI46_04035 0.85 -0.4
873,628 - IAI46_04035 0.85 +0.4
873,628 - IAI46_04035 0.85 +0.5
873,692 + +0.1
873,731 + -0.1
873,732 - +1.2
873,735 + +0.6
873,735 + +0.2
873,759 + -1.3
873,793 + IAI46_04040 0.16 +0.7
873,794 - IAI46_04040 0.16 +0.0
873,811 + IAI46_04040 0.23 +0.3
873,812 - IAI46_04040 0.23 +0.2

Or see this region's nucleotide sequence