Strain Fitness in Serratia liquefaciens MT49 around IAI46_03765

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03755 and IAI46_03760 are separated by 10 nucleotidesIAI46_03760 and IAI46_03765 are separated by 4 nucleotidesIAI46_03765 and IAI46_03770 are separated by 202 nucleotides IAI46_03755: IAI46_03755 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 817,199 to 817,906 _03755 IAI46_03760: IAI46_03760 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 817,917 to 818,390 _03760 IAI46_03765: IAI46_03765 - tRNA pseudouridine(13) synthase TruD, at 818,395 to 819,441 _03765 IAI46_03770: IAI46_03770 - acyltransferase, at 819,644 to 820,924 _03770 Position (kb) 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2at 817.904 kb on + strandat 817.904 kb on + strandat 818.401 kb on - strandat 818.406 kb on + strandat 818.406 kb on + strandat 818.550 kb on + strand, within IAI46_03765at 818.550 kb on + strand, within IAI46_03765at 818.551 kb on - strand, within IAI46_03765at 818.551 kb on - strand, within IAI46_03765at 818.572 kb on + strand, within IAI46_03765at 818.572 kb on + strand, within IAI46_03765at 818.572 kb on + strand, within IAI46_03765at 818.615 kb on - strand, within IAI46_03765at 818.624 kb on + strand, within IAI46_03765at 818.785 kb on - strand, within IAI46_03765at 818.802 kb on + strand, within IAI46_03765at 818.803 kb on - strand, within IAI46_03765at 818.823 kb on - strand, within IAI46_03765at 818.859 kb on - strand, within IAI46_03765at 818.867 kb on - strand, within IAI46_03765at 818.971 kb on + strand, within IAI46_03765at 818.972 kb on - strand, within IAI46_03765at 819.000 kb on + strand, within IAI46_03765at 819.001 kb on - strand, within IAI46_03765at 819.042 kb on + strand, within IAI46_03765at 819.312 kb on + strand, within IAI46_03765at 819.313 kb on - strand, within IAI46_03765at 819.313 kb on - strand, within IAI46_03765at 819.417 kb on + strandat 819.418 kb on - strandat 819.433 kb on - strandat 819.442 kb on + strandat 819.442 kb on + strandat 819.442 kb on + strandat 819.590 kb on + strandat 819.592 kb on + strandat 819.592 kb on + strandat 819.871 kb on + strand, within IAI46_03770at 819.871 kb on + strand, within IAI46_03770at 819.872 kb on - strand, within IAI46_03770at 819.872 kb on - strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.876 kb on - strand, within IAI46_03770at 819.877 kb on + strand, within IAI46_03770at 819.882 kb on + strand, within IAI46_03770at 819.883 kb on - strand, within IAI46_03770at 819.892 kb on - strand, within IAI46_03770at 819.899 kb on - strand, within IAI46_03770at 819.995 kb on - strand, within IAI46_03770at 819.999 kb on - strand, within IAI46_03770at 820.037 kb on + strand, within IAI46_03770at 820.038 kb on - strand, within IAI46_03770at 820.041 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.044 kb on - strand, within IAI46_03770at 820.084 kb on + strand, within IAI46_03770at 820.103 kb on - strand, within IAI46_03770at 820.175 kb on - strand, within IAI46_03770at 820.201 kb on - strand, within IAI46_03770at 820.242 kb on + strand, within IAI46_03770at 820.244 kb on + strand, within IAI46_03770at 820.245 kb on - strand, within IAI46_03770at 820.263 kb on - strand, within IAI46_03770at 820.283 kb on - strand, within IAI46_03770at 820.394 kb on - strand, within IAI46_03770at 820.430 kb on - strand, within IAI46_03770

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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817,904 + +0.7
817,904 + +1.2
818,401 - +0.1
818,406 + +2.0
818,406 + +0.3
818,550 + IAI46_03765 0.15 -0.5
818,550 + IAI46_03765 0.15 +0.1
818,551 - IAI46_03765 0.15 +1.5
818,551 - IAI46_03765 0.15 +0.2
818,572 + IAI46_03765 0.17 +0.8
818,572 + IAI46_03765 0.17 +0.7
818,572 + IAI46_03765 0.17 +0.6
818,615 - IAI46_03765 0.21 -0.2
818,624 + IAI46_03765 0.22 +1.6
818,785 - IAI46_03765 0.37 -0.1
818,802 + IAI46_03765 0.39 -0.6
818,803 - IAI46_03765 0.39 -0.5
818,823 - IAI46_03765 0.41 -0.0
818,859 - IAI46_03765 0.44 +0.2
818,867 - IAI46_03765 0.45 -1.4
818,971 + IAI46_03765 0.55 -1.2
818,972 - IAI46_03765 0.55 -0.7
819,000 + IAI46_03765 0.58 -0.1
819,001 - IAI46_03765 0.58 -0.2
819,042 + IAI46_03765 0.62 -1.0
819,312 + IAI46_03765 0.88 +0.8
819,313 - IAI46_03765 0.88 +0.7
819,313 - IAI46_03765 0.88 -0.3
819,417 + +0.5
819,418 - +0.9
819,433 - +0.6
819,442 + +0.5
819,442 + +0.1
819,442 + +0.1
819,590 + +0.3
819,592 + +0.8
819,592 + -0.5
819,871 + IAI46_03770 0.18 -1.5
819,871 + IAI46_03770 0.18 -0.0
819,872 - IAI46_03770 0.18 -0.6
819,872 - IAI46_03770 0.18 +1.2
819,875 + IAI46_03770 0.18 -2.2
819,875 + IAI46_03770 0.18 -0.4
819,875 + IAI46_03770 0.18 +0.2
819,875 + IAI46_03770 0.18 +0.5
819,875 + IAI46_03770 0.18 +0.3
819,875 + IAI46_03770 0.18 +0.3
819,876 - IAI46_03770 0.18 -0.4
819,877 + IAI46_03770 0.18 +0.1
819,882 + IAI46_03770 0.19 +0.2
819,883 - IAI46_03770 0.19 +0.3
819,892 - IAI46_03770 0.19 +0.7
819,899 - IAI46_03770 0.20 -0.6
819,995 - IAI46_03770 0.27 +0.3
819,999 - IAI46_03770 0.28 +0.2
820,037 + IAI46_03770 0.31 -1.3
820,038 - IAI46_03770 0.31 -0.5
820,041 + IAI46_03770 0.31 +0.5
820,043 + IAI46_03770 0.31 -0.4
820,043 + IAI46_03770 0.31 +0.0
820,043 + IAI46_03770 0.31 +1.0
820,044 - IAI46_03770 0.31 +0.1
820,084 + IAI46_03770 0.34 -0.5
820,103 - IAI46_03770 0.36 +0.0
820,175 - IAI46_03770 0.41 +0.9
820,201 - IAI46_03770 0.43 +1.9
820,242 + IAI46_03770 0.47 -0.7
820,244 + IAI46_03770 0.47 +0.5
820,245 - IAI46_03770 0.47 -0.6
820,263 - IAI46_03770 0.48 +0.2
820,283 - IAI46_03770 0.50 +0.5
820,394 - IAI46_03770 0.59 +1.5
820,430 - IAI46_03770 0.61 -0.0

Or see this region's nucleotide sequence