Strain Fitness in Serratia liquefaciens MT49 around IAI46_03510

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03505 and IAI46_03510 are separated by 458 nucleotidesIAI46_03510 and IAI46_03515 are separated by 65 nucleotides IAI46_03505: IAI46_03505 - dephospho-CoA kinase, at 759,105 to 759,719 _03505 IAI46_03510: IAI46_03510 - GMP reductase, at 760,178 to 761,221 _03510 IAI46_03515: IAI46_03515 - protein transport protein HofC, at 761,287 to 762,486 _03515 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 759.713 kb on - strandat 759.723 kb on - strandat 759.756 kb on - strandat 759.767 kb on - strandat 759.791 kb on + strandat 759.792 kb on - strandat 759.825 kb on + strandat 759.825 kb on + strandat 759.826 kb on - strandat 759.946 kb on + strandat 759.947 kb on - strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.957 kb on - strandat 759.957 kb on - strandat 759.957 kb on - strandat 759.961 kb on + strandat 759.987 kb on + strandat 759.987 kb on + strandat 759.988 kb on - strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.047 kb on - strandat 760.047 kb on - strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.054 kb on + strandat 760.054 kb on + strandat 760.055 kb on - strandat 760.055 kb on - strandat 760.055 kb on - strandat 760.102 kb on - strandat 760.111 kb on - strandat 760.111 kb on - strandat 760.112 kb on + strandat 760.113 kb on - strandat 760.157 kb on + strandat 760.158 kb on - strandat 760.158 kb on - strandat 760.172 kb on + strandat 760.173 kb on - strandat 760.173 kb on - strandat 760.183 kb on + strandat 760.183 kb on + strandat 760.210 kb on + strandat 760.283 kb on - strand, within IAI46_03510at 760.303 kb on + strand, within IAI46_03510at 760.303 kb on + strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.401 kb on + strand, within IAI46_03510at 760.412 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.533 kb on + strand, within IAI46_03510at 760.534 kb on - strand, within IAI46_03510at 760.552 kb on + strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.566 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.649 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.705 kb on + strand, within IAI46_03510at 760.967 kb on - strand, within IAI46_03510at 761.130 kb on - strandat 761.130 kb on - strandat 761.219 kb on + strandat 761.220 kb on - strandat 761.314 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.325 kb on - strandat 761.360 kb on - strandat 761.360 kb on - strandat 761.371 kb on + strandat 761.371 kb on + strandat 761.452 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.458 kb on - strand, within IAI46_03515at 761.458 kb on - strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.605 kb on - strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.878 kb on - strand, within IAI46_03515at 761.956 kb on + strand, within IAI46_03515at 761.980 kb on - strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.173 kb on - strand, within IAI46_03515

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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759,713 - +0.6
759,723 - +0.3
759,756 - +0.2
759,767 - +0.9
759,791 + +0.0
759,792 - +0.2
759,825 + +0.5
759,825 + -0.2
759,826 - -0.1
759,946 + -0.1
759,947 - +0.7
759,956 + +0.4
759,956 + -0.0
759,956 + +0.2
759,956 + +0.5
759,957 - -0.4
759,957 - +0.1
759,957 - +0.8
759,961 + -0.0
759,987 + -0.5
759,987 + +0.8
759,988 - -0.4
760,046 + +0.8
760,046 + -0.2
760,046 + +1.0
760,046 + +1.0
760,046 + +1.0
760,047 - +0.4
760,047 - +0.0
760,050 + +0.7
760,050 + +0.4
760,050 + +0.4
760,050 + +0.2
760,050 + -0.0
760,050 + +0.4
760,050 + +0.1
760,050 + -1.0
760,050 + +0.5
760,051 - +0.1
760,051 - -1.1
760,051 - +0.5
760,051 - +0.7
760,051 - -0.7
760,051 - +0.2
760,051 - -0.3
760,054 + +0.4
760,054 + +0.3
760,055 - +0.1
760,055 - +0.4
760,055 - +0.1
760,102 - +0.4
760,111 - +0.9
760,111 - -0.0
760,112 + +0.1
760,113 - +0.5
760,157 + +0.7
760,158 - +0.9
760,158 - +0.3
760,172 + +0.2
760,173 - +0.6
760,173 - +1.5
760,183 + -0.1
760,183 + +1.7
760,210 + +0.9
760,283 - IAI46_03510 0.10 +0.2
760,303 + IAI46_03510 0.12 +0.3
760,303 + IAI46_03510 0.12 +0.3
760,304 - IAI46_03510 0.12 -0.1
760,304 - IAI46_03510 0.12 -1.3
760,401 + IAI46_03510 0.21 +1.3
760,412 + IAI46_03510 0.22 +0.2
760,419 + IAI46_03510 0.23 +1.0
760,419 + IAI46_03510 0.23 +1.0
760,533 + IAI46_03510 0.34 +0.3
760,534 - IAI46_03510 0.34 +0.9
760,552 + IAI46_03510 0.36 -0.5
760,553 - IAI46_03510 0.36 +0.1
760,553 - IAI46_03510 0.36 -0.5
760,553 - IAI46_03510 0.36 -0.2
760,553 - IAI46_03510 0.36 +0.1
760,566 + IAI46_03510 0.37 -0.4
760,636 + IAI46_03510 0.44 +0.4
760,636 + IAI46_03510 0.44 -1.0
760,636 + IAI46_03510 0.44 -0.7
760,636 + IAI46_03510 0.44 +0.7
760,637 - IAI46_03510 0.44 +0.5
760,637 - IAI46_03510 0.44 -0.9
760,637 - IAI46_03510 0.44 +0.7
760,637 - IAI46_03510 0.44 +1.1
760,637 - IAI46_03510 0.44 -0.4
760,649 - IAI46_03510 0.45 +0.5
760,682 - IAI46_03510 0.48 +1.0
760,682 - IAI46_03510 0.48 +0.0
760,705 + IAI46_03510 0.50 +0.0
760,967 - IAI46_03510 0.76 +0.4
761,130 - +0.7
761,130 - -0.1
761,219 + -0.8
761,220 - +0.4
761,314 + +0.3
761,324 + +0.9
761,324 + +0.9
761,324 + -0.2
761,324 + -0.8
761,325 - +0.6
761,360 - +1.8
761,360 - +0.4
761,371 + +0.1
761,371 + +0.1
761,452 + IAI46_03515 0.14 -1.4
761,457 + IAI46_03515 0.14 -0.4
761,457 + IAI46_03515 0.14 +0.2
761,457 + IAI46_03515 0.14 +0.1
761,457 + IAI46_03515 0.14 +1.8
761,457 + IAI46_03515 0.14 -1.4
761,458 - IAI46_03515 0.14 +0.1
761,458 - IAI46_03515 0.14 +0.9
761,461 + IAI46_03515 0.14 +1.4
761,461 + IAI46_03515 0.14 +1.1
761,461 + IAI46_03515 0.14 +1.1
761,462 - IAI46_03515 0.15 +1.2
761,462 - IAI46_03515 0.15 +0.5
761,462 - IAI46_03515 0.15 +0.1
761,462 - IAI46_03515 0.15 +0.6
761,462 - IAI46_03515 0.15 +0.3
761,605 - IAI46_03515 0.27 -0.4
761,792 + IAI46_03515 0.42 -0.8
761,792 + IAI46_03515 0.42 -0.4
761,792 + IAI46_03515 0.42 -0.6
761,793 - IAI46_03515 0.42 +0.1
761,793 - IAI46_03515 0.42 -1.3
761,798 + IAI46_03515 0.43 +0.7
761,798 + IAI46_03515 0.43 +0.4
761,798 + IAI46_03515 0.43 -0.1
761,798 + IAI46_03515 0.43 +0.8
761,799 - IAI46_03515 0.43 -0.2
761,799 - IAI46_03515 0.43 +0.0
761,878 - IAI46_03515 0.49 -0.1
761,956 + IAI46_03515 0.56 +0.4
761,980 - IAI46_03515 0.58 -0.0
762,100 + IAI46_03515 0.68 +0.4
762,100 + IAI46_03515 0.68 -0.3
762,101 - IAI46_03515 0.68 -1.6
762,101 - IAI46_03515 0.68 +0.7
762,173 - IAI46_03515 0.74 -1.9

Or see this region's nucleotide sequence