Strain Fitness in Serratia liquefaciens MT49 around IAI46_03350

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03345 and IAI46_03350 are separated by 1 nucleotidesIAI46_03350 and IAI46_03355 are separated by 2 nucleotides IAI46_03345: IAI46_03345 - 3-isopropylmalate dehydratase large subunit, at 722,554 to 723,954 _03345 IAI46_03350: IAI46_03350 - 3-isopropylmalate dehydrogenase, at 723,956 to 725,047 _03350 IAI46_03355: IAI46_03355 - 2-isopropylmalate synthase, at 725,050 to 726,624 _03355 Position (kb) 723 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 722.979 kb on + strand, within IAI46_03345at 722.979 kb on + strand, within IAI46_03345at 722.980 kb on - strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.091 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.260 kb on - strand, within IAI46_03345at 723.420 kb on + strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.423 kb on + strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.662 kb on + strand, within IAI46_03345at 723.663 kb on - strand, within IAI46_03345at 723.774 kb on + strand, within IAI46_03345at 723.775 kb on - strand, within IAI46_03345at 723.876 kb on + strandat 723.877 kb on - strandat 723.877 kb on - strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.879 kb on - strandat 723.880 kb on + strandat 723.880 kb on + strandat 723.881 kb on - strandat 723.881 kb on - strandat 723.909 kb on - strandat 723.926 kb on + strandat 723.927 kb on - strandat 723.938 kb on + strandat 723.939 kb on - strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.957 kb on + strandat 723.958 kb on - strandat 723.958 kb on - strandat 723.958 kb on - strandat 723.971 kb on + strandat 723.972 kb on - strandat 724.021 kb on - strandat 724.211 kb on + strand, within IAI46_03350at 724.212 kb on - strand, within IAI46_03350at 724.373 kb on - strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.454 kb on + strand, within IAI46_03350at 724.466 kb on - strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.484 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.614 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.619 kb on - strand, within IAI46_03350at 724.648 kb on + strand, within IAI46_03350at 724.707 kb on + strand, within IAI46_03350at 724.820 kb on + strand, within IAI46_03350at 724.975 kb on + strandat 724.991 kb on + strandat 724.991 kb on + strandat 725.034 kb on + strandat 725.034 kb on + strandat 725.035 kb on - strandat 725.110 kb on + strandat 725.130 kb on + strandat 725.131 kb on - strandat 725.131 kb on - strandat 725.131 kb on - strandat 725.133 kb on + strandat 725.140 kb on + strandat 725.141 kb on - strandat 725.192 kb on - strandat 725.192 kb on - strandat 725.216 kb on + strand, within IAI46_03355at 725.217 kb on - strand, within IAI46_03355at 725.229 kb on + strand, within IAI46_03355at 725.280 kb on - strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.311 kb on - strand, within IAI46_03355at 725.412 kb on + strand, within IAI46_03355at 725.441 kb on + strand, within IAI46_03355at 725.478 kb on + strand, within IAI46_03355at 725.479 kb on - strand, within IAI46_03355at 725.481 kb on + strand, within IAI46_03355at 725.482 kb on - strand, within IAI46_03355at 725.555 kb on + strand, within IAI46_03355at 725.573 kb on + strand, within IAI46_03355at 725.573 kb on + strand, within IAI46_03355at 725.574 kb on - strand, within IAI46_03355at 725.574 kb on - strand, within IAI46_03355at 725.587 kb on - strand, within IAI46_03355at 725.588 kb on + strand, within IAI46_03355at 725.588 kb on + strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.653 kb on + strand, within IAI46_03355at 725.653 kb on + strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.669 kb on - strand, within IAI46_03355at 725.669 kb on - strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.031 kb on - strand, within IAI46_03355

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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722,979 + IAI46_03345 0.30 -0.1
722,979 + IAI46_03345 0.30 +0.2
722,980 - IAI46_03345 0.30 -0.2
722,981 + IAI46_03345 0.30 +0.2
722,981 + IAI46_03345 0.30 -0.2
722,981 + IAI46_03345 0.30 -0.3
722,982 - IAI46_03345 0.31 +0.2
722,982 - IAI46_03345 0.31 -1.1
723,090 + IAI46_03345 0.38 -0.0
723,090 + IAI46_03345 0.38 -1.0
723,090 + IAI46_03345 0.38 -0.0
723,091 - IAI46_03345 0.38 -0.3
723,128 - IAI46_03345 0.41 -0.1
723,128 - IAI46_03345 0.41 -0.8
723,128 - IAI46_03345 0.41 +0.1
723,128 - IAI46_03345 0.41 -1.0
723,260 - IAI46_03345 0.50 -0.8
723,420 + IAI46_03345 0.62 -0.8
723,421 - IAI46_03345 0.62 -0.9
723,421 - IAI46_03345 0.62 +2.4
723,423 + IAI46_03345 0.62 -0.1
723,424 - IAI46_03345 0.62 -0.4
723,424 - IAI46_03345 0.62 -0.7
723,424 - IAI46_03345 0.62 -0.1
723,424 - IAI46_03345 0.62 -0.4
723,424 - IAI46_03345 0.62 -0.5
723,520 - IAI46_03345 0.69 -0.1
723,520 - IAI46_03345 0.69 -0.6
723,632 - IAI46_03345 0.77 -0.2
723,632 - IAI46_03345 0.77 -0.6
723,632 - IAI46_03345 0.77 -1.1
723,662 + IAI46_03345 0.79 +0.2
723,663 - IAI46_03345 0.79 -0.2
723,774 + IAI46_03345 0.87 -1.0
723,775 - IAI46_03345 0.87 +0.6
723,876 + -0.4
723,877 - +0.8
723,877 - +1.0
723,878 + -0.3
723,878 + -1.2
723,878 + -0.7
723,878 + -0.1
723,878 + -0.1
723,879 - -0.8
723,880 + -0.1
723,880 + +0.5
723,881 - -0.8
723,881 - +0.3
723,909 - +0.3
723,926 + +0.3
723,927 - +0.2
723,938 + -1.3
723,939 - -0.7
723,940 + -0.0
723,940 + -0.1
723,940 + -0.7
723,940 + -0.1
723,941 - -0.3
723,941 - +0.1
723,941 - -0.4
723,941 - -1.2
723,957 + +0.1
723,958 - +0.4
723,958 - -1.2
723,958 - -0.1
723,971 + -0.3
723,972 - +0.5
724,021 - -0.5
724,211 + IAI46_03350 0.23 +1.1
724,212 - IAI46_03350 0.23 +0.7
724,373 - IAI46_03350 0.38 -1.1
724,374 + IAI46_03350 0.38 +0.3
724,374 + IAI46_03350 0.38 -2.3
724,374 + IAI46_03350 0.38 +0.3
724,374 + IAI46_03350 0.38 +0.1
724,374 + IAI46_03350 0.38 -0.6
724,374 + IAI46_03350 0.38 -0.1
724,374 + IAI46_03350 0.38 -0.1
724,374 + IAI46_03350 0.38 -0.2
724,374 + IAI46_03350 0.38 +0.5
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.8
724,375 - IAI46_03350 0.38 -0.5
724,375 - IAI46_03350 0.38 -0.1
724,375 - IAI46_03350 0.38 +0.2
724,375 - IAI46_03350 0.38 -0.5
724,375 - IAI46_03350 0.38 -0.7
724,375 - IAI46_03350 0.38 +0.2
724,375 - IAI46_03350 0.38 -0.6
724,375 - IAI46_03350 0.38 -0.3
724,375 - IAI46_03350 0.38 +1.6
724,375 - IAI46_03350 0.38 -0.4
724,375 - IAI46_03350 0.38 -0.8
724,375 - IAI46_03350 0.38 -2.3
724,378 + IAI46_03350 0.39 +0.5
724,378 + IAI46_03350 0.39 -0.4
724,378 + IAI46_03350 0.39 +0.5
724,378 + IAI46_03350 0.39 -0.8
724,378 + IAI46_03350 0.39 +0.1
724,379 - IAI46_03350 0.39 -0.1
724,379 - IAI46_03350 0.39 -0.2
724,379 - IAI46_03350 0.39 -0.2
724,379 - IAI46_03350 0.39 -0.4
724,454 + IAI46_03350 0.46 -0.3
724,466 - IAI46_03350 0.47 -2.9
724,483 + IAI46_03350 0.48 -0.3
724,483 + IAI46_03350 0.48 -0.5
724,484 - IAI46_03350 0.48 +0.5
724,549 - IAI46_03350 0.54 +0.1
724,549 - IAI46_03350 0.54 -0.1
724,549 - IAI46_03350 0.54 -0.6
724,614 + IAI46_03350 0.60 -1.5
724,618 + IAI46_03350 0.61 +0.5
724,618 + IAI46_03350 0.61 +0.2
724,618 + IAI46_03350 0.61 +1.2
724,619 - IAI46_03350 0.61 -0.0
724,648 + IAI46_03350 0.63 -2.2
724,707 + IAI46_03350 0.69 -0.6
724,820 + IAI46_03350 0.79 -1.4
724,975 + -1.7
724,991 + -0.9
724,991 + -0.2
725,034 + +0.5
725,034 + +0.6
725,035 - -0.2
725,110 + +0.5
725,130 + +0.1
725,131 - -0.4
725,131 - -0.1
725,131 - +0.1
725,133 + -0.5
725,140 + -0.5
725,141 - +0.5
725,192 - -0.7
725,192 - +0.3
725,216 + IAI46_03355 0.11 -0.6
725,217 - IAI46_03355 0.11 +0.2
725,229 + IAI46_03355 0.11 +0.6
725,280 - IAI46_03355 0.15 +0.6
725,310 + IAI46_03355 0.17 +0.1
725,310 + IAI46_03355 0.17 +0.3
725,310 + IAI46_03355 0.17 +0.2
725,310 + IAI46_03355 0.17 -1.0
725,311 - IAI46_03355 0.17 -0.3
725,412 + IAI46_03355 0.23 -0.3
725,441 + IAI46_03355 0.25 -0.6
725,478 + IAI46_03355 0.27 +0.0
725,479 - IAI46_03355 0.27 -0.8
725,481 + IAI46_03355 0.27 +0.5
725,482 - IAI46_03355 0.27 +0.5
725,555 + IAI46_03355 0.32 -0.6
725,573 + IAI46_03355 0.33 -0.5
725,573 + IAI46_03355 0.33 -0.6
725,574 - IAI46_03355 0.33 +0.3
725,574 - IAI46_03355 0.33 -0.2
725,587 - IAI46_03355 0.34 +0.3
725,588 + IAI46_03355 0.34 -0.2
725,588 + IAI46_03355 0.34 -0.7
725,589 - IAI46_03355 0.34 +0.7
725,589 - IAI46_03355 0.34 +1.2
725,589 - IAI46_03355 0.34 -0.8
725,589 - IAI46_03355 0.34 +0.8
725,589 - IAI46_03355 0.34 -0.1
725,653 + IAI46_03355 0.38 -0.1
725,653 + IAI46_03355 0.38 +1.1
725,654 - IAI46_03355 0.38 +0.5
725,654 - IAI46_03355 0.38 -0.3
725,654 - IAI46_03355 0.38 -0.3
725,654 - IAI46_03355 0.38 +0.3
725,669 - IAI46_03355 0.39 +0.9
725,669 - IAI46_03355 0.39 -1.2
725,854 + IAI46_03355 0.51 -1.2
725,854 + IAI46_03355 0.51 +0.4
725,854 + IAI46_03355 0.51 -1.1
726,030 + IAI46_03355 0.62 +1.3
726,030 + IAI46_03355 0.62 -0.3
726,030 + IAI46_03355 0.62 +0.0
726,031 - IAI46_03355 0.62 -0.3

Or see this region's nucleotide sequence