Strain Fitness in Serratia liquefaciens MT49 around IAI46_02440

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02435 and IAI46_02440 are separated by 548 nucleotidesIAI46_02440 and IAI46_02445 are separated by 36 nucleotides IAI46_02435: IAI46_02435 - hypothetical protein, at 522,993 to 523,673 _02435 IAI46_02440: IAI46_02440 - hypothetical protein, at 524,222 to 524,506 _02440 IAI46_02445: IAI46_02445 - hypothetical protein, at 524,543 to 525,268 _02445 Position (kb) 524 525Strain fitness (log2 ratio) -2 -1 0 1at 523.468 kb on + strand, within IAI46_02435at 523.616 kb on - strandat 523.621 kb on + strandat 523.622 kb on - strandat 523.719 kb on + strandat 523.720 kb on - strandat 523.816 kb on - strandat 523.838 kb on + strandat 523.926 kb on - strandat 523.956 kb on - strandat 524.187 kb on - strandat 524.220 kb on - strandat 524.220 kb on - strandat 524.220 kb on - strandat 524.332 kb on + strand, within IAI46_02440at 524.405 kb on - strand, within IAI46_02440at 524.690 kb on + strand, within IAI46_02445at 524.751 kb on - strand, within IAI46_02445at 524.779 kb on - strand, within IAI46_02445at 524.779 kb on - strand, within IAI46_02445at 525.027 kb on - strand, within IAI46_02445at 525.110 kb on - strand, within IAI46_02445at 525.118 kb on + strand, within IAI46_02445at 525.162 kb on + strand, within IAI46_02445at 525.208 kb on + strandat 525.219 kb on + strandat 525.288 kb on - strandat 525.316 kb on - strandat 525.356 kb on - strandat 525.357 kb on + strandat 525.358 kb on - strandat 525.392 kb on + strandat 525.397 kb on - strandat 525.397 kb on - strandat 525.404 kb on + strandat 525.405 kb on - strandat 525.428 kb on + strandat 525.435 kb on + strandat 525.436 kb on - strandat 525.439 kb on + strandat 525.444 kb on + strandat 525.444 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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523,468 + IAI46_02435 0.70 +0.0
523,616 - +0.1
523,621 + +0.1
523,622 - +0.2
523,719 + -0.1
523,720 - +1.2
523,816 - -0.3
523,838 + -0.8
523,926 - +0.4
523,956 - +0.4
524,187 - +0.7
524,220 - -0.1
524,220 - +0.3
524,220 - -0.7
524,332 + IAI46_02440 0.39 -0.2
524,405 - IAI46_02440 0.64 +1.0
524,690 + IAI46_02445 0.20 +0.9
524,751 - IAI46_02445 0.29 -1.8
524,779 - IAI46_02445 0.33 -0.4
524,779 - IAI46_02445 0.33 +0.3
525,027 - IAI46_02445 0.67 +0.4
525,110 - IAI46_02445 0.78 +0.9
525,118 + IAI46_02445 0.79 +0.4
525,162 + IAI46_02445 0.85 -0.8
525,208 + -0.1
525,219 + +1.1
525,288 - -0.4
525,316 - +0.4
525,356 - -0.2
525,357 + +0.8
525,358 - +0.4
525,392 + +1.0
525,397 - -0.7
525,397 - +0.7
525,404 + -0.0
525,405 - +0.4
525,428 + +0.1
525,435 + -1.5
525,436 - +0.1
525,439 + -0.8
525,444 + -0.4
525,444 + -0.0

Or see this region's nucleotide sequence