Strain Fitness in Serratia liquefaciens MT49 around IAI46_02060

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02050 and IAI46_02055 are separated by 47 nucleotidesIAI46_02055 and IAI46_02060 overlap by 50 nucleotidesIAI46_02060 and IAI46_02065 are separated by 14 nucleotidesIAI46_02065 and IAI46_02070 overlap by 4 nucleotides IAI46_02050: IAI46_02050 - YhbP family protein, at 439,233 to 439,667 _02050 IAI46_02055: IAI46_02055 - NAD(P)H-binding protein, at 439,715 to 440,353 _02055 IAI46_02060: IAI46_02060 - phosphonate metabolism protein PhnP, at 440,304 to 441,086 _02060 IAI46_02065: IAI46_02065 - acetyltransferase, at 441,101 to 441,703 _02065 IAI46_02070: IAI46_02070 - ribose 1,5-bisphosphokinase, at 441,700 to 442,269 _02070 Position (kb) 440 441 442Strain fitness (log2 ratio) -2 -1 0 1at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.342 kb on - strand, within IAI46_02050at 439.547 kb on + strand, within IAI46_02050at 439.548 kb on - strand, within IAI46_02050at 439.626 kb on - strandat 439.680 kb on - strandat 439.714 kb on + strandat 439.715 kb on - strandat 439.907 kb on - strand, within IAI46_02055at 439.968 kb on - strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.079 kb on - strand, within IAI46_02055at 440.081 kb on - strand, within IAI46_02055at 440.160 kb on + strand, within IAI46_02055at 440.215 kb on + strand, within IAI46_02055at 440.436 kb on + strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.442 kb on - strand, within IAI46_02060at 440.566 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.645 kb on - strand, within IAI46_02060at 440.797 kb on + strand, within IAI46_02060at 440.839 kb on - strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.848 kb on - strand, within IAI46_02060at 441.105 kb on - strandat 441.105 kb on - strandat 441.105 kb on - strandat 441.108 kb on + strandat 441.109 kb on - strandat 441.109 kb on - strandat 441.267 kb on + strand, within IAI46_02065at 441.268 kb on - strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.439 kb on - strand, within IAI46_02065at 441.476 kb on - strand, within IAI46_02065at 441.483 kb on + strand, within IAI46_02065at 441.483 kb on + strand, within IAI46_02065at 441.508 kb on + strand, within IAI46_02065at 441.516 kb on + strand, within IAI46_02065at 441.516 kb on + strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.577 kb on + strand, within IAI46_02065at 441.578 kb on - strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.585 kb on + strand, within IAI46_02065at 441.586 kb on - strand, within IAI46_02065at 441.632 kb on + strand, within IAI46_02065at 441.632 kb on + strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.637 kb on - strand, within IAI46_02065at 441.645 kb on - strandat 441.658 kb on + strandat 441.751 kb on + strandat 441.752 kb on - strandat 441.903 kb on + strand, within IAI46_02070at 441.903 kb on + strand, within IAI46_02070at 441.904 kb on - strand, within IAI46_02070at 441.910 kb on - strand, within IAI46_02070at 442.043 kb on + strand, within IAI46_02070at 442.043 kb on + strand, within IAI46_02070at 442.044 kb on - strand, within IAI46_02070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
439,319 + IAI46_02050 0.20 +0.3
439,319 + IAI46_02050 0.20 -1.8
439,319 + IAI46_02050 0.20 +0.7
439,320 - IAI46_02050 0.20 +0.3
439,320 - IAI46_02050 0.20 +0.9
439,320 - IAI46_02050 0.20 +0.3
439,342 - IAI46_02050 0.25 -0.4
439,547 + IAI46_02050 0.72 -1.5
439,548 - IAI46_02050 0.72 -1.0
439,626 - -0.3
439,680 - +0.3
439,714 + +0.5
439,715 - -0.5
439,907 - IAI46_02055 0.30 -1.0
439,968 - IAI46_02055 0.40 -0.4
440,068 + IAI46_02055 0.55 +0.1
440,068 + IAI46_02055 0.55 -0.0
440,068 + IAI46_02055 0.55 -0.4
440,069 - IAI46_02055 0.55 -1.8
440,069 - IAI46_02055 0.55 -0.3
440,069 - IAI46_02055 0.55 -0.2
440,079 - IAI46_02055 0.57 +0.3
440,081 - IAI46_02055 0.57 +0.2
440,160 + IAI46_02055 0.70 +0.5
440,215 + IAI46_02055 0.78 +1.5
440,436 + IAI46_02060 0.17 +0.3
440,437 - IAI46_02060 0.17 +0.2
440,437 - IAI46_02060 0.17 -0.5
440,442 - IAI46_02060 0.18 -0.6
440,566 - IAI46_02060 0.33 -0.0
440,612 - IAI46_02060 0.39 -1.4
440,612 - IAI46_02060 0.39 +0.5
440,645 - IAI46_02060 0.44 +0.5
440,797 + IAI46_02060 0.63 +0.2
440,839 - IAI46_02060 0.68 +0.3
440,847 + IAI46_02060 0.69 -0.8
440,847 + IAI46_02060 0.69 +0.2
440,848 - IAI46_02060 0.69 +0.2
441,105 - -0.6
441,105 - -0.4
441,105 - +0.7
441,108 + -0.3
441,109 - -0.2
441,109 - +0.7
441,267 + IAI46_02065 0.28 -1.5
441,268 - IAI46_02065 0.28 -0.5
441,438 + IAI46_02065 0.56 +0.2
441,438 + IAI46_02065 0.56 -0.3
441,438 + IAI46_02065 0.56 +0.4
441,439 - IAI46_02065 0.56 -0.3
441,476 - IAI46_02065 0.62 -0.2
441,483 + IAI46_02065 0.63 +0.2
441,483 + IAI46_02065 0.63 -0.3
441,508 + IAI46_02065 0.67 +0.2
441,516 + IAI46_02065 0.69 +1.2
441,516 + IAI46_02065 0.69 +1.5
441,517 - IAI46_02065 0.69 +0.0
441,517 - IAI46_02065 0.69 -0.0
441,517 - IAI46_02065 0.69 +0.1
441,517 - IAI46_02065 0.69 -0.8
441,577 + IAI46_02065 0.79 +0.0
441,578 - IAI46_02065 0.79 +0.1
441,579 + IAI46_02065 0.79 +0.6
441,579 + IAI46_02065 0.79 +0.4
441,579 + IAI46_02065 0.79 +0.4
441,580 - IAI46_02065 0.79 +0.2
441,580 - IAI46_02065 0.79 -1.0
441,580 - IAI46_02065 0.79 -0.1
441,580 - IAI46_02065 0.79 -0.6
441,580 - IAI46_02065 0.79 -0.2
441,580 - IAI46_02065 0.79 +1.0
441,580 - IAI46_02065 0.79 -0.5
441,580 - IAI46_02065 0.79 +0.4
441,585 + IAI46_02065 0.80 -0.5
441,586 - IAI46_02065 0.80 -0.1
441,632 + IAI46_02065 0.88 +0.3
441,632 + IAI46_02065 0.88 -1.3
441,633 - IAI46_02065 0.88 +1.6
441,633 - IAI46_02065 0.88 +1.1
441,633 - IAI46_02065 0.88 +0.7
441,633 - IAI46_02065 0.88 +0.4
441,633 - IAI46_02065 0.88 -0.0
441,633 - IAI46_02065 0.88 +0.6
441,633 - IAI46_02065 0.88 -0.6
441,636 + IAI46_02065 0.89 +0.1
441,636 + IAI46_02065 0.89 -0.7
441,636 + IAI46_02065 0.89 +0.6
441,636 + IAI46_02065 0.89 -0.3
441,637 - IAI46_02065 0.89 +0.8
441,645 - -0.6
441,658 + -0.1
441,751 + +0.3
441,752 - -2.0
441,903 + IAI46_02070 0.36 +0.7
441,903 + IAI46_02070 0.36 -0.6
441,904 - IAI46_02070 0.36 +0.5
441,910 - IAI46_02070 0.37 +0.2
442,043 + IAI46_02070 0.60 +0.2
442,043 + IAI46_02070 0.60 -0.1
442,044 - IAI46_02070 0.60 +0.3

Or see this region's nucleotide sequence