Strain Fitness in Serratia liquefaciens MT49 around IAI46_01655

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01650 and IAI46_01655 are separated by 500 nucleotidesIAI46_01655 and IAI46_01660 are separated by 59 nucleotides IAI46_01650: IAI46_01650 - adenylosuccinate synthase, at 361,100 to 362,398 _01650 IAI46_01655: IAI46_01655 - nitric oxide-sensing transcriptional repressor NsrR, at 362,899 to 363,324 _01655 IAI46_01660: IAI46_01660 - ribonuclease R, at 363,384 to 365,870 _01660 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 362.216 kb on + strand, within IAI46_01650at 362.294 kb on + strandat 362.396 kb on + strandat 362.396 kb on + strandat 362.397 kb on - strandat 362.416 kb on + strandat 362.416 kb on + strandat 362.416 kb on + strandat 362.416 kb on + strandat 362.416 kb on + strandat 362.417 kb on - strandat 362.417 kb on - strandat 362.417 kb on - strandat 362.417 kb on - strandat 362.417 kb on - strandat 362.417 kb on - strandat 362.517 kb on - strandat 362.573 kb on + strandat 362.573 kb on + strandat 362.574 kb on - strandat 362.598 kb on + strandat 362.598 kb on + strandat 362.599 kb on - strandat 362.599 kb on - strandat 362.607 kb on + strandat 362.607 kb on + strandat 362.608 kb on - strandat 362.608 kb on - strandat 362.608 kb on - strandat 362.608 kb on - strandat 362.666 kb on + strandat 362.666 kb on + strandat 362.666 kb on + strandat 362.667 kb on - strandat 362.667 kb on - strandat 362.667 kb on - strandat 362.670 kb on - strandat 362.685 kb on + strandat 362.686 kb on - strandat 362.789 kb on + strandat 362.794 kb on - strandat 362.794 kb on - strandat 362.821 kb on + strandat 362.822 kb on - strandat 362.831 kb on + strandat 362.835 kb on + strandat 362.835 kb on + strandat 362.894 kb on + strandat 362.895 kb on - strandat 362.895 kb on - strandat 362.895 kb on - strandat 362.895 kb on - strandat 362.923 kb on + strandat 362.944 kb on + strand, within IAI46_01655at 362.944 kb on + strand, within IAI46_01655at 362.945 kb on - strand, within IAI46_01655at 362.945 kb on - strand, within IAI46_01655at 363.001 kb on + strand, within IAI46_01655at 363.021 kb on + strand, within IAI46_01655at 363.021 kb on + strand, within IAI46_01655at 363.022 kb on - strand, within IAI46_01655at 363.026 kb on + strand, within IAI46_01655at 363.026 kb on + strand, within IAI46_01655at 363.026 kb on + strand, within IAI46_01655at 363.027 kb on - strand, within IAI46_01655at 363.027 kb on - strand, within IAI46_01655at 363.165 kb on + strand, within IAI46_01655at 363.177 kb on + strand, within IAI46_01655at 363.192 kb on - strand, within IAI46_01655at 363.233 kb on + strand, within IAI46_01655at 363.234 kb on - strand, within IAI46_01655at 363.258 kb on + strand, within IAI46_01655at 363.276 kb on + strand, within IAI46_01655at 363.301 kb on + strandat 363.301 kb on + strandat 363.302 kb on - strandat 363.308 kb on + strandat 363.308 kb on + strandat 363.308 kb on + strandat 363.309 kb on - strandat 363.309 kb on - strandat 363.309 kb on - strandat 363.309 kb on - strandat 363.423 kb on + strandat 363.708 kb on + strand, within IAI46_01660at 363.708 kb on + strand, within IAI46_01660at 363.708 kb on + strand, within IAI46_01660at 363.708 kb on + strand, within IAI46_01660at 363.708 kb on + strand, within IAI46_01660at 363.709 kb on - strand, within IAI46_01660at 363.953 kb on + strand, within IAI46_01660at 363.953 kb on + strand, within IAI46_01660at 364.054 kb on + strand, within IAI46_01660at 364.055 kb on - strand, within IAI46_01660at 364.058 kb on + strand, within IAI46_01660at 364.233 kb on + strand, within IAI46_01660at 364.233 kb on + strand, within IAI46_01660at 364.234 kb on - strand, within IAI46_01660at 364.234 kb on - strand, within IAI46_01660at 364.294 kb on - strand, within IAI46_01660at 364.294 kb on - strand, within IAI46_01660at 364.296 kb on + strand, within IAI46_01660at 364.296 kb on + strand, within IAI46_01660

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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362,216 + IAI46_01650 0.86 -0.8
362,294 + -1.6
362,396 + +0.9
362,396 + +0.6
362,397 - +0.4
362,416 + +1.0
362,416 + +0.1
362,416 + -0.2
362,416 + -1.2
362,416 + +0.5
362,417 - +0.4
362,417 - +0.6
362,417 - -0.5
362,417 - +0.7
362,417 - +0.6
362,417 - +0.0
362,517 - -0.7
362,573 + +1.2
362,573 + +0.1
362,574 - -0.1
362,598 + -0.3
362,598 + +1.4
362,599 - +0.6
362,599 - +0.9
362,607 + -0.4
362,607 + +0.4
362,608 - -0.2
362,608 - +0.1
362,608 - +0.4
362,608 - +0.2
362,666 + +0.6
362,666 + -0.0
362,666 + -0.3
362,667 - +0.1
362,667 - -0.3
362,667 - +0.5
362,670 - +0.6
362,685 + -1.7
362,686 - -0.2
362,789 + -0.6
362,794 - +0.8
362,794 - +0.2
362,821 + +0.1
362,822 - +0.7
362,831 + +0.0
362,835 + -0.4
362,835 + -0.1
362,894 + +0.7
362,895 - -0.2
362,895 - +0.1
362,895 - -0.1
362,895 - +1.1
362,923 + +0.9
362,944 + IAI46_01655 0.11 +0.5
362,944 + IAI46_01655 0.11 -0.3
362,945 - IAI46_01655 0.11 -0.5
362,945 - IAI46_01655 0.11 -0.0
363,001 + IAI46_01655 0.24 -0.3
363,021 + IAI46_01655 0.29 +1.0
363,021 + IAI46_01655 0.29 -0.9
363,022 - IAI46_01655 0.29 +0.3
363,026 + IAI46_01655 0.30 +0.8
363,026 + IAI46_01655 0.30 +0.4
363,026 + IAI46_01655 0.30 -1.1
363,027 - IAI46_01655 0.30 -0.6
363,027 - IAI46_01655 0.30 +1.7
363,165 + IAI46_01655 0.62 +1.0
363,177 + IAI46_01655 0.65 +0.4
363,192 - IAI46_01655 0.69 +0.4
363,233 + IAI46_01655 0.78 +0.2
363,234 - IAI46_01655 0.79 +0.6
363,258 + IAI46_01655 0.84 +0.4
363,276 + IAI46_01655 0.88 -1.4
363,301 + +0.0
363,301 + +0.8
363,302 - +2.0
363,308 + -0.2
363,308 + +0.4
363,308 + -1.4
363,309 - -1.5
363,309 - +0.2
363,309 - +0.5
363,309 - -0.2
363,423 + -0.8
363,708 + IAI46_01660 0.13 -0.5
363,708 + IAI46_01660 0.13 +0.5
363,708 + IAI46_01660 0.13 +0.0
363,708 + IAI46_01660 0.13 +0.4
363,708 + IAI46_01660 0.13 -1.9
363,709 - IAI46_01660 0.13 +0.4
363,953 + IAI46_01660 0.23 -0.1
363,953 + IAI46_01660 0.23 -0.4
364,054 + IAI46_01660 0.27 +0.1
364,055 - IAI46_01660 0.27 +0.4
364,058 + IAI46_01660 0.27 +0.3
364,233 + IAI46_01660 0.34 -0.6
364,233 + IAI46_01660 0.34 +0.7
364,234 - IAI46_01660 0.34 +1.0
364,234 - IAI46_01660 0.34 -0.2
364,294 - IAI46_01660 0.37 +0.5
364,294 - IAI46_01660 0.37 +0.4
364,296 + IAI46_01660 0.37 +0.2
364,296 + IAI46_01660 0.37 -0.4

Or see this region's nucleotide sequence