Strain Fitness in Serratia liquefaciens MT49 around IAI46_01315

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01300 and IAI46_01305 are separated by 1 nucleotidesIAI46_01305 and IAI46_01310 overlap by 4 nucleotidesIAI46_01310 and IAI46_01315 are separated by 4 nucleotidesIAI46_01315 and IAI46_01320 overlap by 8 nucleotides IAI46_01300: IAI46_01300 - thiazole synthase, at 287,465 to 288,244 _01300 IAI46_01305: IAI46_01305 - sulfur carrier protein ThiS, at 288,246 to 288,446 _01305 IAI46_01310: IAI46_01310 - HesA/MoeB/ThiF family protein, at 288,443 to 289,192 _01310 IAI46_01315: IAI46_01315 - thiamine phosphate synthase, at 289,197 to 289,835 _01315 IAI46_01320: IAI46_01320 - phosphomethylpyrimidine synthase ThiC, at 289,828 to 291,711 _01320 Position (kb) 289 290Strain fitness (log2 ratio) -1 0 1 2at 288.217 kb on + strandat 288.217 kb on + strandat 288.218 kb on - strandat 288.239 kb on + strandat 288.240 kb on - strandat 288.432 kb on - strandat 288.572 kb on + strand, within IAI46_01310at 288.696 kb on + strand, within IAI46_01310at 288.696 kb on + strand, within IAI46_01310at 288.697 kb on - strand, within IAI46_01310at 288.697 kb on - strand, within IAI46_01310at 288.697 kb on - strand, within IAI46_01310at 288.697 kb on - strand, within IAI46_01310at 288.697 kb on - strand, within IAI46_01310at 288.805 kb on + strand, within IAI46_01310at 288.806 kb on - strand, within IAI46_01310at 288.917 kb on + strand, within IAI46_01310at 288.918 kb on - strand, within IAI46_01310at 289.006 kb on + strand, within IAI46_01310at 289.006 kb on + strand, within IAI46_01310at 289.007 kb on - strand, within IAI46_01310at 289.030 kb on + strand, within IAI46_01310at 289.030 kb on + strand, within IAI46_01310at 289.053 kb on + strand, within IAI46_01310at 289.053 kb on + strand, within IAI46_01310at 289.054 kb on - strand, within IAI46_01310at 289.073 kb on + strand, within IAI46_01310at 289.073 kb on + strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.139 kb on - strandat 289.164 kb on + strandat 289.164 kb on + strandat 289.263 kb on - strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.325 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.581 kb on + strand, within IAI46_01315at 289.581 kb on + strand, within IAI46_01315at 289.582 kb on - strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.589 kb on - strand, within IAI46_01315at 289.602 kb on - strand, within IAI46_01315at 289.618 kb on + strand, within IAI46_01315at 289.628 kb on + strand, within IAI46_01315at 289.628 kb on + strand, within IAI46_01315at 289.645 kb on + strand, within IAI46_01315at 289.652 kb on + strand, within IAI46_01315at 289.652 kb on + strand, within IAI46_01315at 289.731 kb on - strand, within IAI46_01315at 289.731 kb on - strand, within IAI46_01315at 289.783 kb on + strandat 289.784 kb on - strandat 289.786 kb on - strandat 289.826 kb on + strandat 289.826 kb on + strandat 289.826 kb on + strandat 289.872 kb on - strandat 289.872 kb on - strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.931 kb on - strandat 289.931 kb on - strandat 289.936 kb on + strandat 289.967 kb on + strandat 289.968 kb on - strandat 289.968 kb on - strandat 289.976 kb on - strandat 290.283 kb on - strand, within IAI46_01320at 290.387 kb on + strand, within IAI46_01320at 290.388 kb on - strand, within IAI46_01320at 290.452 kb on + strand, within IAI46_01320at 290.452 kb on + strand, within IAI46_01320at 290.453 kb on - strand, within IAI46_01320at 290.489 kb on + strand, within IAI46_01320at 290.489 kb on + strand, within IAI46_01320at 290.609 kb on + strand, within IAI46_01320at 290.649 kb on - strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.686 kb on - strand, within IAI46_01320at 290.743 kb on + strand, within IAI46_01320at 290.744 kb on - strand, within IAI46_01320at 290.748 kb on - strand, within IAI46_01320at 290.759 kb on - strand, within IAI46_01320at 290.780 kb on + strand, within IAI46_01320at 290.780 kb on + strand, within IAI46_01320at 290.810 kb on - strand, within IAI46_01320at 290.810 kb on - strand, within IAI46_01320at 290.815 kb on - strand, within IAI46_01320

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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288,217 + +0.2
288,217 + +0.1
288,218 - +0.4
288,239 + +0.8
288,240 - +0.1
288,432 - -0.2
288,572 + IAI46_01310 0.17 -0.1
288,696 + IAI46_01310 0.34 +0.4
288,696 + IAI46_01310 0.34 +1.8
288,697 - IAI46_01310 0.34 -0.3
288,697 - IAI46_01310 0.34 -0.6
288,697 - IAI46_01310 0.34 -0.5
288,697 - IAI46_01310 0.34 -0.7
288,697 - IAI46_01310 0.34 -0.1
288,805 + IAI46_01310 0.48 +0.3
288,806 - IAI46_01310 0.48 +0.3
288,917 + IAI46_01310 0.63 +0.8
288,918 - IAI46_01310 0.63 -0.2
289,006 + IAI46_01310 0.75 -0.2
289,006 + IAI46_01310 0.75 +0.1
289,007 - IAI46_01310 0.75 +0.4
289,030 + IAI46_01310 0.78 -0.1
289,030 + IAI46_01310 0.78 -0.3
289,053 + IAI46_01310 0.81 +0.0
289,053 + IAI46_01310 0.81 +0.7
289,054 - IAI46_01310 0.81 -0.0
289,073 + IAI46_01310 0.84 +0.0
289,073 + IAI46_01310 0.84 -0.4
289,074 - IAI46_01310 0.84 +0.3
289,074 - IAI46_01310 0.84 -0.4
289,074 - IAI46_01310 0.84 +0.4
289,139 - +0.5
289,164 + +0.4
289,164 + +0.4
289,263 - IAI46_01315 0.10 -0.9
289,286 + IAI46_01315 0.14 -1.1
289,286 + IAI46_01315 0.14 -0.0
289,286 + IAI46_01315 0.14 -0.9
289,325 + IAI46_01315 0.20 -0.1
289,439 + IAI46_01315 0.38 +0.1
289,439 + IAI46_01315 0.38 -0.5
289,439 + IAI46_01315 0.38 +0.2
289,456 + IAI46_01315 0.41 +0.9
289,456 + IAI46_01315 0.41 +1.1
289,456 + IAI46_01315 0.41 -0.5
289,456 + IAI46_01315 0.41 -0.4
289,457 - IAI46_01315 0.41 +0.2
289,457 - IAI46_01315 0.41 +0.4
289,457 - IAI46_01315 0.41 +0.5
289,581 + IAI46_01315 0.60 +0.1
289,581 + IAI46_01315 0.60 +0.8
289,582 - IAI46_01315 0.60 -0.2
289,588 + IAI46_01315 0.61 +0.1
289,588 + IAI46_01315 0.61 -0.2
289,588 + IAI46_01315 0.61 -0.2
289,588 + IAI46_01315 0.61 +0.0
289,589 - IAI46_01315 0.61 +1.0
289,602 - IAI46_01315 0.63 -1.0
289,618 + IAI46_01315 0.66 +0.8
289,628 + IAI46_01315 0.67 +0.9
289,628 + IAI46_01315 0.67 -0.8
289,645 + IAI46_01315 0.70 -0.3
289,652 + IAI46_01315 0.71 -0.1
289,652 + IAI46_01315 0.71 +0.5
289,731 - IAI46_01315 0.84 -1.4
289,731 - IAI46_01315 0.84 +0.0
289,783 + -0.4
289,784 - +0.2
289,786 - -0.3
289,826 + -0.7
289,826 + -0.2
289,826 + +0.3
289,872 - -1.7
289,872 - -0.2
289,930 + +1.3
289,930 + -0.0
289,930 + +0.8
289,930 + +0.1
289,930 + +0.2
289,931 - -1.1
289,931 - -0.1
289,936 + +0.4
289,967 + +0.4
289,968 - -0.8
289,968 - +0.8
289,976 - -0.3
290,283 - IAI46_01320 0.24 -0.5
290,387 + IAI46_01320 0.30 +0.3
290,388 - IAI46_01320 0.30 +0.2
290,452 + IAI46_01320 0.33 -0.1
290,452 + IAI46_01320 0.33 -0.3
290,453 - IAI46_01320 0.33 +0.6
290,489 + IAI46_01320 0.35 +0.4
290,489 + IAI46_01320 0.35 +0.7
290,609 + IAI46_01320 0.41 -0.3
290,649 - IAI46_01320 0.44 -0.9
290,685 + IAI46_01320 0.45 +0.4
290,685 + IAI46_01320 0.45 +0.2
290,685 + IAI46_01320 0.45 -0.6
290,686 - IAI46_01320 0.46 -0.6
290,743 + IAI46_01320 0.49 +0.3
290,744 - IAI46_01320 0.49 +0.1
290,748 - IAI46_01320 0.49 +0.4
290,759 - IAI46_01320 0.49 +0.2
290,780 + IAI46_01320 0.51 -0.3
290,780 + IAI46_01320 0.51 +0.3
290,810 - IAI46_01320 0.52 -1.4
290,810 - IAI46_01320 0.52 +0.3
290,815 - IAI46_01320 0.52 -1.1

Or see this region's nucleotide sequence