Strain Fitness in Serratia liquefaciens MT49 around IAI46_00760

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00750 and IAI46_00755 are separated by 7 nucleotidesIAI46_00755 and IAI46_00760 are separated by 64 nucleotidesIAI46_00760 and IAI46_00765 are separated by 201 nucleotides IAI46_00750: IAI46_00750 - AbrB family transcriptional regulator, at 171,521 to 172,579 _00750 IAI46_00755: IAI46_00755 - EamA family transporter RarD, at 172,587 to 173,474 _00755 IAI46_00760: IAI46_00760 - thioesterase family protein, at 173,539 to 174,009 _00760 IAI46_00765: IAI46_00765 - phospholipase A, at 174,211 to 175,089 _00765 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1at 172.578 kb on - strandat 172.608 kb on - strandat 172.608 kb on - strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.610 kb on - strandat 172.625 kb on + strandat 172.626 kb on - strandat 172.650 kb on - strandat 172.694 kb on - strand, within IAI46_00755at 172.694 kb on - strand, within IAI46_00755at 172.735 kb on + strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.897 kb on + strand, within IAI46_00755at 172.984 kb on + strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.077 kb on - strand, within IAI46_00755at 173.159 kb on - strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.181 kb on - strand, within IAI46_00755at 173.204 kb on + strand, within IAI46_00755at 173.205 kb on - strand, within IAI46_00755at 173.327 kb on + strand, within IAI46_00755at 173.328 kb on - strand, within IAI46_00755at 173.377 kb on - strand, within IAI46_00755at 173.399 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.552 kb on + strandat 173.553 kb on - strandat 173.553 kb on - strandat 173.592 kb on + strand, within IAI46_00760at 173.593 kb on - strand, within IAI46_00760at 173.638 kb on + strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.684 kb on + strand, within IAI46_00760at 173.685 kb on - strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.891 kb on + strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.948 kb on + strand, within IAI46_00760at 173.948 kb on + strand, within IAI46_00760at 173.949 kb on - strand, within IAI46_00760at 173.987 kb on - strandat 173.987 kb on - strandat 174.004 kb on - strandat 174.004 kb on - strandat 174.009 kb on + strandat 174.009 kb on + strandat 174.009 kb on + strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.013 kb on + strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.035 kb on + strandat 174.043 kb on + strandat 174.077 kb on - strandat 174.077 kb on - strandat 174.079 kb on + strandat 174.080 kb on - strandat 174.088 kb on - strandat 174.107 kb on + strandat 174.108 kb on - strandat 174.115 kb on + strandat 174.119 kb on + strandat 174.119 kb on + strandat 174.120 kb on - strandat 174.154 kb on + strandat 174.154 kb on + strandat 174.154 kb on + strandat 174.300 kb on + strand, within IAI46_00765at 174.312 kb on - strand, within IAI46_00765at 174.324 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.367 kb on + strand, within IAI46_00765at 174.368 kb on - strand, within IAI46_00765at 174.385 kb on + strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.437 kb on - strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.546 kb on + strand, within IAI46_00765at 174.547 kb on - strand, within IAI46_00765at 174.547 kb on - strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.611 kb on - strand, within IAI46_00765at 174.611 kb on - strand, within IAI46_00765at 174.756 kb on + strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.862 kb on + strand, within IAI46_00765at 174.863 kb on - strand, within IAI46_00765at 174.880 kb on + strand, within IAI46_00765at 174.881 kb on - strand, within IAI46_00765at 174.919 kb on + strand, within IAI46_00765at 174.919 kb on + strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.991 kb on + strand, within IAI46_00765at 174.991 kb on + strand, within IAI46_00765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
172,578 - -1.0
172,608 - -0.2
172,608 - +1.6
172,609 + +0.0
172,609 + -0.3
172,609 + +0.1
172,609 + +0.8
172,609 + +0.5
172,610 - +0.7
172,625 + +0.1
172,626 - -0.2
172,650 - +0.4
172,694 - IAI46_00755 0.12 -0.4
172,694 - IAI46_00755 0.12 -0.5
172,735 + IAI46_00755 0.17 +0.3
172,736 - IAI46_00755 0.17 +0.7
172,736 - IAI46_00755 0.17 -0.1
172,897 + IAI46_00755 0.35 -0.8
172,984 + IAI46_00755 0.45 +1.0
172,998 - IAI46_00755 0.46 +0.5
172,998 - IAI46_00755 0.46 -1.2
173,074 - IAI46_00755 0.55 +0.2
173,074 - IAI46_00755 0.55 +0.8
173,077 - IAI46_00755 0.55 +1.4
173,159 - IAI46_00755 0.64 +0.4
173,180 + IAI46_00755 0.67 -0.6
173,180 + IAI46_00755 0.67 +0.2
173,180 + IAI46_00755 0.67 +0.6
173,181 - IAI46_00755 0.67 +0.1
173,204 + IAI46_00755 0.69 -0.7
173,205 - IAI46_00755 0.70 -0.9
173,327 + IAI46_00755 0.83 -0.4
173,328 - IAI46_00755 0.83 -0.3
173,377 - IAI46_00755 0.89 -0.4
173,399 - +0.1
173,410 - +0.8
173,410 - -0.2
173,410 - +0.4
173,410 - +0.1
173,410 - +0.1
173,410 - -1.4
173,410 - -0.3
173,410 - -0.0
173,534 + +0.1
173,534 + -0.2
173,534 + -0.1
173,535 - -0.2
173,535 - +0.3
173,535 - +0.3
173,552 + +0.6
173,553 - +0.4
173,553 - -0.2
173,592 + IAI46_00760 0.11 +1.6
173,593 - IAI46_00760 0.11 -0.0
173,638 + IAI46_00760 0.21 +1.1
173,639 - IAI46_00760 0.21 -0.3
173,639 - IAI46_00760 0.21 -0.1
173,639 - IAI46_00760 0.21 +0.7
173,684 + IAI46_00760 0.31 +0.6
173,685 - IAI46_00760 0.31 +1.5
173,701 + IAI46_00760 0.34 -2.0
173,701 + IAI46_00760 0.34 -0.3
173,701 + IAI46_00760 0.34 +0.0
173,701 + IAI46_00760 0.34 +1.1
173,702 - IAI46_00760 0.35 +0.8
173,702 - IAI46_00760 0.35 +0.3
173,702 - IAI46_00760 0.35 -0.6
173,702 - IAI46_00760 0.35 +0.4
173,891 + IAI46_00760 0.75 +0.5
173,892 - IAI46_00760 0.75 -0.3
173,892 - IAI46_00760 0.75 +0.5
173,892 - IAI46_00760 0.75 +0.2
173,948 + IAI46_00760 0.87 +0.6
173,948 + IAI46_00760 0.87 -0.0
173,949 - IAI46_00760 0.87 -0.1
173,987 - -0.4
173,987 - +0.1
174,004 - +0.4
174,004 - +0.0
174,009 + +0.4
174,009 + +0.1
174,009 + -0.2
174,010 - +0.0
174,010 - -0.2
174,010 - +0.2
174,010 - +0.5
174,010 - +0.4
174,010 - +0.4
174,010 - -1.3
174,010 - -0.0
174,013 + +0.6
174,014 - -0.7
174,014 - +0.9
174,014 - +0.4
174,014 - +0.0
174,035 + -0.6
174,043 + +0.3
174,077 - -0.1
174,077 - +0.8
174,079 + -0.6
174,080 - +0.1
174,088 - +0.1
174,107 + +0.1
174,108 - +0.8
174,115 + -0.8
174,119 + +0.1
174,119 + +0.2
174,120 - -1.3
174,154 + +0.6
174,154 + +0.1
174,154 + -0.6
174,300 + IAI46_00765 0.10 +0.1
174,312 - IAI46_00765 0.11 +1.7
174,324 + IAI46_00765 0.13 -0.0
174,360 + IAI46_00765 0.17 +0.0
174,360 + IAI46_00765 0.17 +0.0
174,367 + IAI46_00765 0.18 +0.4
174,368 - IAI46_00765 0.18 +0.3
174,385 + IAI46_00765 0.20 -0.8
174,386 - IAI46_00765 0.20 -0.5
174,386 - IAI46_00765 0.20 -0.4
174,386 - IAI46_00765 0.20 -0.6
174,386 - IAI46_00765 0.20 +0.2
174,386 - IAI46_00765 0.20 -2.4
174,394 + IAI46_00765 0.21 +1.5
174,394 + IAI46_00765 0.21 -0.3
174,394 + IAI46_00765 0.21 +0.0
174,394 + IAI46_00765 0.21 -0.4
174,394 + IAI46_00765 0.21 +0.7
174,395 - IAI46_00765 0.21 +0.4
174,395 - IAI46_00765 0.21 -0.5
174,395 - IAI46_00765 0.21 +0.4
174,411 + IAI46_00765 0.23 +0.4
174,411 + IAI46_00765 0.23 -0.5
174,411 + IAI46_00765 0.23 -0.2
174,436 + IAI46_00765 0.26 -0.3
174,436 + IAI46_00765 0.26 -0.1
174,436 + IAI46_00765 0.26 +0.2
174,437 - IAI46_00765 0.26 +0.3
174,544 + IAI46_00765 0.38 +0.7
174,544 + IAI46_00765 0.38 +0.5
174,544 + IAI46_00765 0.38 -0.0
174,545 - IAI46_00765 0.38 -0.7
174,545 - IAI46_00765 0.38 -0.5
174,545 - IAI46_00765 0.38 -0.0
174,545 - IAI46_00765 0.38 -0.0
174,546 + IAI46_00765 0.38 +0.2
174,547 - IAI46_00765 0.38 -0.5
174,547 - IAI46_00765 0.38 -0.3
174,610 + IAI46_00765 0.45 -0.3
174,610 + IAI46_00765 0.45 +0.2
174,610 + IAI46_00765 0.45 -1.1
174,611 - IAI46_00765 0.46 +0.6
174,611 - IAI46_00765 0.46 -0.1
174,756 + IAI46_00765 0.62 -0.5
174,757 - IAI46_00765 0.62 +0.4
174,757 - IAI46_00765 0.62 +0.0
174,757 - IAI46_00765 0.62 +0.1
174,850 + IAI46_00765 0.73 +0.2
174,850 + IAI46_00765 0.73 +0.3
174,850 + IAI46_00765 0.73 +0.1
174,850 + IAI46_00765 0.73 +0.5
174,851 - IAI46_00765 0.73 +0.7
174,851 - IAI46_00765 0.73 -0.1
174,851 - IAI46_00765 0.73 +0.3
174,851 - IAI46_00765 0.73 +0.1
174,862 + IAI46_00765 0.74 +0.6
174,863 - IAI46_00765 0.74 +0.2
174,880 + IAI46_00765 0.76 -0.1
174,881 - IAI46_00765 0.76 -0.4
174,919 + IAI46_00765 0.81 -0.6
174,919 + IAI46_00765 0.81 -0.2
174,920 - IAI46_00765 0.81 +1.3
174,920 - IAI46_00765 0.81 +0.2
174,920 - IAI46_00765 0.81 +0.7
174,920 - IAI46_00765 0.81 -0.4
174,920 - IAI46_00765 0.81 +0.2
174,922 - IAI46_00765 0.81 +1.1
174,922 - IAI46_00765 0.81 +0.4
174,922 - IAI46_00765 0.81 +0.1
174,991 + IAI46_00765 0.89 +0.7
174,991 + IAI46_00765 0.89 +0.4

Or see this region's nucleotide sequence