Strain Fitness in Serratia liquefaciens MT49 around IAI46_00535

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00530 and IAI46_00535 are separated by 5 nucleotidesIAI46_00535 and IAI46_00540 overlap by 19 nucleotides IAI46_00530: IAI46_00530 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 119,680 to 121,983 _00530 IAI46_00535: IAI46_00535 - cellulase, at 121,989 to 123,101 _00535 IAI46_00540: IAI46_00540 - cellulose biosynthesis protein BcsC, at 123,083 to 126,556 _00540 Position (kb) 121 122 123 124Strain fitness (log2 ratio) -2 -1 0 1 2at 121.050 kb on + strand, within IAI46_00530at 121.051 kb on - strand, within IAI46_00530at 121.102 kb on + strand, within IAI46_00530at 121.147 kb on + strand, within IAI46_00530at 121.148 kb on - strand, within IAI46_00530at 121.218 kb on + strand, within IAI46_00530at 121.219 kb on - strand, within IAI46_00530at 121.440 kb on + strand, within IAI46_00530at 121.458 kb on + strand, within IAI46_00530at 121.459 kb on - strand, within IAI46_00530at 121.482 kb on + strand, within IAI46_00530at 121.482 kb on + strand, within IAI46_00530at 121.482 kb on + strand, within IAI46_00530at 121.483 kb on - strand, within IAI46_00530at 121.702 kb on + strand, within IAI46_00530at 121.813 kb on + strandat 121.813 kb on + strandat 121.813 kb on + strandat 121.814 kb on - strandat 121.814 kb on - strandat 121.814 kb on - strandat 121.816 kb on + strandat 121.816 kb on + strandat 121.817 kb on - strandat 121.817 kb on - strandat 121.817 kb on - strandat 121.817 kb on - strandat 121.817 kb on - strandat 121.817 kb on - strandat 121.846 kb on - strandat 121.846 kb on - strandat 121.846 kb on - strandat 121.846 kb on - strandat 121.846 kb on - strandat 121.926 kb on - strandat 121.926 kb on - strandat 122.082 kb on + strandat 122.094 kb on + strandat 122.094 kb on + strandat 122.094 kb on + strandat 122.096 kb on + strandat 122.166 kb on + strand, within IAI46_00535at 122.167 kb on - strand, within IAI46_00535at 122.358 kb on + strand, within IAI46_00535at 122.358 kb on + strand, within IAI46_00535at 122.432 kb on + strand, within IAI46_00535at 122.432 kb on + strand, within IAI46_00535at 122.432 kb on + strand, within IAI46_00535at 122.433 kb on - strand, within IAI46_00535at 122.433 kb on - strand, within IAI46_00535at 122.433 kb on - strand, within IAI46_00535at 122.433 kb on - strand, within IAI46_00535at 122.535 kb on + strand, within IAI46_00535at 122.536 kb on - strand, within IAI46_00535at 122.536 kb on - strand, within IAI46_00535at 122.536 kb on - strand, within IAI46_00535at 122.540 kb on - strand, within IAI46_00535at 122.540 kb on - strand, within IAI46_00535at 122.715 kb on + strand, within IAI46_00535at 122.715 kb on + strand, within IAI46_00535at 122.716 kb on - strand, within IAI46_00535at 122.716 kb on - strand, within IAI46_00535at 122.716 kb on - strand, within IAI46_00535at 122.733 kb on + strand, within IAI46_00535at 122.734 kb on - strand, within IAI46_00535at 122.771 kb on + strand, within IAI46_00535at 122.772 kb on - strand, within IAI46_00535at 122.772 kb on - strand, within IAI46_00535at 122.801 kb on + strand, within IAI46_00535at 122.802 kb on - strand, within IAI46_00535at 122.802 kb on - strand, within IAI46_00535at 122.802 kb on - strand, within IAI46_00535at 122.802 kb on - strand, within IAI46_00535at 122.813 kb on - strand, within IAI46_00535at 122.954 kb on + strand, within IAI46_00535at 122.954 kb on + strand, within IAI46_00535at 122.954 kb on + strand, within IAI46_00535at 122.955 kb on - strand, within IAI46_00535at 123.089 kb on - strandat 123.100 kb on - strandat 123.123 kb on + strandat 123.295 kb on + strandat 123.379 kb on + strandat 123.380 kb on - strandat 123.380 kb on - strandat 123.380 kb on - strandat 123.412 kb on + strandat 123.546 kb on - strand, within IAI46_00540at 123.620 kb on + strand, within IAI46_00540at 123.621 kb on - strand, within IAI46_00540at 123.693 kb on - strand, within IAI46_00540at 123.900 kb on - strand, within IAI46_00540at 124.028 kb on + strand, within IAI46_00540at 124.090 kb on + strand, within IAI46_00540

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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121,050 + IAI46_00530 0.59 +0.2
121,051 - IAI46_00530 0.60 +0.4
121,102 + IAI46_00530 0.62 -1.1
121,147 + IAI46_00530 0.64 +0.3
121,148 - IAI46_00530 0.64 +1.5
121,218 + IAI46_00530 0.67 +0.3
121,219 - IAI46_00530 0.67 -0.5
121,440 + IAI46_00530 0.76 -1.1
121,458 + IAI46_00530 0.77 -1.3
121,459 - IAI46_00530 0.77 +0.1
121,482 + IAI46_00530 0.78 -0.9
121,482 + IAI46_00530 0.78 +0.8
121,482 + IAI46_00530 0.78 -1.5
121,483 - IAI46_00530 0.78 -0.3
121,702 + IAI46_00530 0.88 -1.1
121,813 + -0.0
121,813 + -1.1
121,813 + +1.0
121,814 - +0.8
121,814 - +0.6
121,814 - +0.2
121,816 + -0.0
121,816 + +0.2
121,817 - +0.6
121,817 - +0.5
121,817 - +0.3
121,817 - +0.8
121,817 - -0.3
121,817 - -0.1
121,846 - +0.5
121,846 - -0.0
121,846 - -1.4
121,846 - +0.1
121,846 - +0.0
121,926 - +0.1
121,926 - -1.4
122,082 + -0.1
122,094 + +0.0
122,094 + +0.6
122,094 + -0.4
122,096 + +0.8
122,166 + IAI46_00535 0.16 -0.4
122,167 - IAI46_00535 0.16 +0.1
122,358 + IAI46_00535 0.33 +2.2
122,358 + IAI46_00535 0.33 +1.1
122,432 + IAI46_00535 0.40 +0.4
122,432 + IAI46_00535 0.40 +0.1
122,432 + IAI46_00535 0.40 +1.0
122,433 - IAI46_00535 0.40 -0.1
122,433 - IAI46_00535 0.40 -2.5
122,433 - IAI46_00535 0.40 +0.4
122,433 - IAI46_00535 0.40 +0.3
122,535 + IAI46_00535 0.49 +0.6
122,536 - IAI46_00535 0.49 +0.6
122,536 - IAI46_00535 0.49 +1.1
122,536 - IAI46_00535 0.49 -0.0
122,540 - IAI46_00535 0.50 -0.7
122,540 - IAI46_00535 0.50 +0.6
122,715 + IAI46_00535 0.65 -0.6
122,715 + IAI46_00535 0.65 -0.4
122,716 - IAI46_00535 0.65 -0.5
122,716 - IAI46_00535 0.65 +0.4
122,716 - IAI46_00535 0.65 -0.6
122,733 + IAI46_00535 0.67 -0.3
122,734 - IAI46_00535 0.67 -0.7
122,771 + IAI46_00535 0.70 -0.2
122,772 - IAI46_00535 0.70 -1.0
122,772 - IAI46_00535 0.70 +0.2
122,801 + IAI46_00535 0.73 -0.2
122,802 - IAI46_00535 0.73 +0.9
122,802 - IAI46_00535 0.73 +0.3
122,802 - IAI46_00535 0.73 +0.0
122,802 - IAI46_00535 0.73 -0.7
122,813 - IAI46_00535 0.74 -0.2
122,954 + IAI46_00535 0.87 +0.7
122,954 + IAI46_00535 0.87 +0.3
122,954 + IAI46_00535 0.87 -0.3
122,955 - IAI46_00535 0.87 +0.4
123,089 - -0.2
123,100 - +0.4
123,123 + -0.4
123,295 + -1.0
123,379 + +0.3
123,380 - +0.6
123,380 - +0.5
123,380 - -0.1
123,412 + +0.6
123,546 - IAI46_00540 0.13 +0.0
123,620 + IAI46_00540 0.15 -0.2
123,621 - IAI46_00540 0.15 -0.0
123,693 - IAI46_00540 0.18 +0.3
123,900 - IAI46_00540 0.24 -0.1
124,028 + IAI46_00540 0.27 -0.5
124,090 + IAI46_00540 0.29 +0.4

Or see this region's nucleotide sequence