Strain Fitness in Serratia liquefaciens MT49 around IAI46_00095

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00090 and IAI46_00095 are separated by 109 nucleotidesIAI46_00095 and IAI46_00100 are separated by 5 nucleotidesIAI46_00100 and IAI46_00105 are separated by 186 nucleotides IAI46_00090: IAI46_00090 - MFS transporter, at 19,442 to 20,710 _00090 IAI46_00095: IAI46_00095 - sugar kinase, at 20,820 to 21,779 _00095 IAI46_00100: IAI46_00100 - sugar phosphate isomerase/epimerase, at 21,785 to 22,537 _00100 IAI46_00105: IAI46_00105 - LacI family DNA-binding transcriptional regulator, at 22,724 to 23,740 _00105 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 19.820 kb on - strand, within IAI46_00090at 19.881 kb on + strand, within IAI46_00090at 19.881 kb on + strand, within IAI46_00090at 19.881 kb on + strand, within IAI46_00090at 19.881 kb on + strand, within IAI46_00090at 19.881 kb on + strand, within IAI46_00090at 19.882 kb on - strand, within IAI46_00090at 19.886 kb on + strand, within IAI46_00090at 19.942 kb on + strand, within IAI46_00090at 19.943 kb on - strand, within IAI46_00090at 19.943 kb on - strand, within IAI46_00090at 19.943 kb on - strand, within IAI46_00090at 19.943 kb on - strand, within IAI46_00090at 20.041 kb on - strand, within IAI46_00090at 20.041 kb on - strand, within IAI46_00090at 20.044 kb on + strand, within IAI46_00090at 20.044 kb on + strand, within IAI46_00090at 20.045 kb on - strand, within IAI46_00090at 20.045 kb on - strand, within IAI46_00090at 20.217 kb on + strand, within IAI46_00090at 20.217 kb on + strand, within IAI46_00090at 20.290 kb on + strand, within IAI46_00090at 20.290 kb on + strand, within IAI46_00090at 20.291 kb on - strand, within IAI46_00090at 20.291 kb on - strand, within IAI46_00090at 20.291 kb on - strand, within IAI46_00090at 20.291 kb on - strand, within IAI46_00090at 20.334 kb on + strand, within IAI46_00090at 20.335 kb on - strand, within IAI46_00090at 20.335 kb on - strand, within IAI46_00090at 20.380 kb on + strand, within IAI46_00090at 20.497 kb on - strand, within IAI46_00090at 20.635 kb on - strandat 20.646 kb on + strandat 20.646 kb on + strandat 20.647 kb on - strandat 20.653 kb on + strandat 20.673 kb on + strandat 20.673 kb on + strandat 20.673 kb on + strandat 20.673 kb on + strandat 20.673 kb on + strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.761 kb on + strandat 20.762 kb on - strandat 20.794 kb on + strandat 20.794 kb on + strandat 20.795 kb on - strandat 20.797 kb on + strandat 20.797 kb on + strandat 20.797 kb on + strandat 20.797 kb on + strandat 20.798 kb on - strandat 20.798 kb on - strandat 20.798 kb on - strandat 20.804 kb on + strandat 20.805 kb on - strandat 20.816 kb on - strandat 20.817 kb on + strandat 20.817 kb on + strandat 20.817 kb on + strandat 20.818 kb on - strandat 20.818 kb on - strandat 20.821 kb on + strandat 20.821 kb on + strandat 20.894 kb on + strandat 21.071 kb on + strand, within IAI46_00095at 21.088 kb on - strand, within IAI46_00095at 21.379 kb on + strand, within IAI46_00095at 21.379 kb on + strand, within IAI46_00095at 21.380 kb on - strand, within IAI46_00095at 21.496 kb on + strand, within IAI46_00095at 21.500 kb on + strand, within IAI46_00095at 21.500 kb on + strand, within IAI46_00095at 21.500 kb on + strand, within IAI46_00095at 21.501 kb on - strand, within IAI46_00095at 21.501 kb on - strand, within IAI46_00095at 21.501 kb on - strand, within IAI46_00095at 21.501 kb on - strand, within IAI46_00095at 21.786 kb on + strandat 21.810 kb on + strandat 21.810 kb on + strandat 21.810 kb on + strandat 21.810 kb on + strandat 21.810 kb on + strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.811 kb on - strandat 21.813 kb on + strandat 21.978 kb on + strand, within IAI46_00100at 21.979 kb on - strand, within IAI46_00100at 21.979 kb on - strand, within IAI46_00100at 21.979 kb on - strand, within IAI46_00100at 22.078 kb on + strand, within IAI46_00100at 22.079 kb on - strand, within IAI46_00100at 22.215 kb on + strand, within IAI46_00100at 22.215 kb on + strand, within IAI46_00100at 22.215 kb on + strand, within IAI46_00100at 22.215 kb on + strand, within IAI46_00100at 22.216 kb on - strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.297 kb on + strand, within IAI46_00100at 22.298 kb on - strand, within IAI46_00100at 22.298 kb on - strand, within IAI46_00100at 22.298 kb on - strand, within IAI46_00100at 22.333 kb on - strand, within IAI46_00100at 22.424 kb on + strand, within IAI46_00100at 22.425 kb on - strand, within IAI46_00100at 22.425 kb on - strand, within IAI46_00100at 22.460 kb on + strand, within IAI46_00100at 22.504 kb on - strandat 22.691 kb on - strandat 22.691 kb on - strandat 22.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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19,820 - IAI46_00090 0.30 -0.3
19,881 + IAI46_00090 0.35 +0.5
19,881 + IAI46_00090 0.35 +0.8
19,881 + IAI46_00090 0.35 -1.0
19,881 + IAI46_00090 0.35 +0.1
19,881 + IAI46_00090 0.35 -0.2
19,882 - IAI46_00090 0.35 +0.7
19,886 + IAI46_00090 0.35 -1.5
19,942 + IAI46_00090 0.39 +0.1
19,943 - IAI46_00090 0.39 -0.8
19,943 - IAI46_00090 0.39 +0.3
19,943 - IAI46_00090 0.39 -0.0
19,943 - IAI46_00090 0.39 -0.1
20,041 - IAI46_00090 0.47 -0.3
20,041 - IAI46_00090 0.47 -0.3
20,044 + IAI46_00090 0.47 +0.7
20,044 + IAI46_00090 0.47 +0.8
20,045 - IAI46_00090 0.48 +0.1
20,045 - IAI46_00090 0.48 +0.8
20,217 + IAI46_00090 0.61 +0.2
20,217 + IAI46_00090 0.61 +0.9
20,290 + IAI46_00090 0.67 -1.7
20,290 + IAI46_00090 0.67 -0.1
20,291 - IAI46_00090 0.67 +0.3
20,291 - IAI46_00090 0.67 -0.0
20,291 - IAI46_00090 0.67 +1.3
20,291 - IAI46_00090 0.67 -0.1
20,334 + IAI46_00090 0.70 +0.7
20,335 - IAI46_00090 0.70 +0.3
20,335 - IAI46_00090 0.70 +0.7
20,380 + IAI46_00090 0.74 +0.3
20,497 - IAI46_00090 0.83 -0.5
20,635 - -0.4
20,646 + -0.4
20,646 + +1.1
20,647 - +0.2
20,653 + -0.1
20,673 + +0.3
20,673 + +0.1
20,673 + +0.2
20,673 + +0.9
20,673 + +0.3
20,674 - -1.1
20,674 - +0.4
20,674 - +0.1
20,674 - +0.7
20,761 + +0.4
20,762 - +0.2
20,794 + +0.0
20,794 + +0.0
20,795 - +0.1
20,797 + +0.2
20,797 + +0.3
20,797 + +0.5
20,797 + -0.1
20,798 - +0.2
20,798 - -0.7
20,798 - -0.1
20,804 + +0.7
20,805 - +0.4
20,816 - +0.0
20,817 + +0.2
20,817 + -2.3
20,817 + -0.9
20,818 - +0.1
20,818 - +0.1
20,821 + -0.0
20,821 + +0.1
20,894 + -0.5
21,071 + IAI46_00095 0.26 +0.6
21,088 - IAI46_00095 0.28 +2.5
21,379 + IAI46_00095 0.58 +0.0
21,379 + IAI46_00095 0.58 +0.1
21,380 - IAI46_00095 0.58 +0.2
21,496 + IAI46_00095 0.70 -0.6
21,500 + IAI46_00095 0.71 +0.7
21,500 + IAI46_00095 0.71 -0.7
21,500 + IAI46_00095 0.71 -0.2
21,501 - IAI46_00095 0.71 -1.5
21,501 - IAI46_00095 0.71 -0.0
21,501 - IAI46_00095 0.71 +0.4
21,501 - IAI46_00095 0.71 -0.1
21,786 + -0.3
21,810 + +2.3
21,810 + +0.4
21,810 + +0.0
21,810 + -0.8
21,810 + +0.3
21,811 - +0.3
21,811 - +0.9
21,811 - +0.4
21,811 - -0.4
21,811 - +0.1
21,811 - +0.7
21,811 - +0.1
21,813 + +1.6
21,978 + IAI46_00100 0.26 -0.5
21,979 - IAI46_00100 0.26 -0.2
21,979 - IAI46_00100 0.26 -0.2
21,979 - IAI46_00100 0.26 -0.0
22,078 + IAI46_00100 0.39 +1.0
22,079 - IAI46_00100 0.39 -0.2
22,215 + IAI46_00100 0.57 +0.9
22,215 + IAI46_00100 0.57 -0.2
22,215 + IAI46_00100 0.57 -0.9
22,215 + IAI46_00100 0.57 -0.9
22,216 - IAI46_00100 0.57 +0.8
22,297 + IAI46_00100 0.68 +0.1
22,297 + IAI46_00100 0.68 +0.5
22,297 + IAI46_00100 0.68 +0.1
22,297 + IAI46_00100 0.68 +0.6
22,297 + IAI46_00100 0.68 +0.3
22,297 + IAI46_00100 0.68 -0.7
22,297 + IAI46_00100 0.68 +0.4
22,297 + IAI46_00100 0.68 +0.4
22,297 + IAI46_00100 0.68 -0.2
22,297 + IAI46_00100 0.68 +0.1
22,297 + IAI46_00100 0.68 +0.5
22,298 - IAI46_00100 0.68 +0.2
22,298 - IAI46_00100 0.68 -0.1
22,298 - IAI46_00100 0.68 -0.0
22,333 - IAI46_00100 0.73 +0.5
22,424 + IAI46_00100 0.85 -0.2
22,425 - IAI46_00100 0.85 +0.5
22,425 - IAI46_00100 0.85 +0.3
22,460 + IAI46_00100 0.90 +0.3
22,504 - -1.0
22,691 - -0.5
22,691 - -0.6
22,691 - +2.1

Or see this region's nucleotide sequence