Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00050 and IAI46_00055 are separated by 128 nucleotides IAI46_00055 and IAI46_00060 are separated by 224 nucleotides IAI46_00060 and IAI46_00065 are separated by 36 nucleotides
IAI46_00050: IAI46_00050 - heat shock chaperone IbpA, at 11,194 to 11,607
_00050
IAI46_00055: IAI46_00055 - heat shock chaperone IbpB, at 11,736 to 12,164
_00055
IAI46_00060: IAI46_00060 - putative transporter, at 12,389 to 14,047
_00060
IAI46_00065: IAI46_00065 - valine--pyruvate transaminase, at 14,084 to 15,337
_00065
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.405 kb on + strand, within IAI46_00050 at 11.421 kb on + strand, within IAI46_00050 at 11.446 kb on + strand, within IAI46_00050 at 11.447 kb on - strand, within IAI46_00050 at 11.450 kb on + strand, within IAI46_00050 at 11.450 kb on + strand, within IAI46_00050 at 11.450 kb on + strand, within IAI46_00050 at 11.451 kb on - strand, within IAI46_00050 at 11.451 kb on - strand, within IAI46_00050 at 11.451 kb on - strand, within IAI46_00050 at 11.451 kb on - strand, within IAI46_00050 at 11.451 kb on - strand, within IAI46_00050 at 11.452 kb on + strand, within IAI46_00050 at 11.452 kb on + strand, within IAI46_00050 at 11.452 kb on + strand, within IAI46_00050 at 11.453 kb on - strand, within IAI46_00050 at 11.453 kb on - strand, within IAI46_00050 at 11.515 kb on - strand, within IAI46_00050 at 11.515 kb on - strand, within IAI46_00050 at 11.545 kb on + strand, within IAI46_00050 at 11.545 kb on + strand, within IAI46_00050 at 11.545 kb on + strand, within IAI46_00050 at 11.546 kb on - strand, within IAI46_00050 at 11.546 kb on - strand, within IAI46_00050 at 11.553 kb on + strand, within IAI46_00050 at 11.592 kb on + strand at 11.594 kb on + strand at 11.594 kb on + strand at 11.612 kb on + strand at 11.613 kb on - strand at 11.669 kb on + strand at 11.669 kb on + strand at 11.674 kb on + strand at 11.675 kb on - strand at 11.675 kb on - strand at 11.679 kb on + strand at 11.684 kb on + strand at 11.685 kb on - strand at 11.687 kb on - strand at 11.698 kb on + strand at 11.704 kb on + strand at 11.719 kb on + strand at 11.719 kb on + strand at 11.720 kb on - strand at 11.720 kb on - strand at 11.720 kb on - strand at 11.720 kb on - strand at 11.720 kb on - strand at 11.730 kb on + strand at 11.730 kb on + strand at 11.730 kb on + strand at 11.730 kb on + strand at 11.731 kb on - strand at 11.741 kb on + strand at 11.741 kb on + strand at 11.741 kb on + strand at 11.741 kb on + strand at 11.835 kb on + strand, within IAI46_00055 at 11.895 kb on - strand, within IAI46_00055 at 11.895 kb on - strand, within IAI46_00055 at 11.920 kb on + strand, within IAI46_00055 at 11.941 kb on + strand, within IAI46_00055 at 11.941 kb on + strand, within IAI46_00055 at 11.942 kb on - strand, within IAI46_00055 at 11.942 kb on - strand, within IAI46_00055 at 11.979 kb on + strand, within IAI46_00055 at 11.980 kb on - strand, within IAI46_00055 at 12.080 kb on + strand, within IAI46_00055 at 12.187 kb on + strand at 12.188 kb on - strand at 12.188 kb on - strand at 12.191 kb on + strand at 12.192 kb on - strand at 12.192 kb on - strand at 12.217 kb on + strand at 12.218 kb on - strand at 12.281 kb on + strand at 12.281 kb on + strand at 12.281 kb on + strand at 12.282 kb on - strand at 12.282 kb on - strand at 12.282 kb on - strand at 12.290 kb on + strand at 12.291 kb on - strand at 12.291 kb on - strand at 12.312 kb on - strand at 12.312 kb on - strand at 12.315 kb on + strand at 12.315 kb on + strand at 12.315 kb on + strand at 12.316 kb on - strand at 12.316 kb on - strand at 12.316 kb on - strand at 12.332 kb on + strand at 12.333 kb on - strand at 12.388 kb on + strand at 12.388 kb on + strand at 12.388 kb on + strand at 12.388 kb on + strand at 12.389 kb on - strand at 12.415 kb on + strand at 12.415 kb on + strand at 12.415 kb on + strand at 12.415 kb on + strand at 12.415 kb on + strand at 12.416 kb on - strand at 12.416 kb on - strand at 12.455 kb on - strand at 12.468 kb on - strand at 12.468 kb on - strand at 12.602 kb on + strand, within IAI46_00060 at 12.602 kb on + strand, within IAI46_00060 at 12.603 kb on - strand, within IAI46_00060 at 12.603 kb on - strand, within IAI46_00060 at 12.609 kb on + strand, within IAI46_00060 at 12.609 kb on + strand, within IAI46_00060 at 12.609 kb on + strand, within IAI46_00060 at 12.609 kb on + strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.610 kb on - strand, within IAI46_00060 at 12.613 kb on + strand, within IAI46_00060 at 12.613 kb on + strand, within IAI46_00060 at 12.614 kb on - strand, within IAI46_00060 at 12.614 kb on - strand, within IAI46_00060 at 12.614 kb on - strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.866 kb on + strand, within IAI46_00060 at 12.867 kb on - strand, within IAI46_00060 at 12.867 kb on - strand, within IAI46_00060 at 12.878 kb on + strand, within IAI46_00060 at 12.878 kb on + strand, within IAI46_00060 at 12.921 kb on + strand, within IAI46_00060 at 12.922 kb on - strand, within IAI46_00060 at 12.922 kb on - strand, within IAI46_00060 at 12.922 kb on - strand, within IAI46_00060 at 12.922 kb on - strand, within IAI46_00060 at 13.081 kb on + strand, within IAI46_00060 at 13.081 kb on + strand, within IAI46_00060 at 13.081 kb on + strand, within IAI46_00060 at 13.082 kb on - strand, within IAI46_00060 at 13.082 kb on - strand, within IAI46_00060 at 13.082 kb on - strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.158 kb on - strand, within IAI46_00060 at 13.158 kb on - strand, within IAI46_00060 at 13.392 kb on + strand, within IAI46_00060 at 13.392 kb on + strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.534 kb on - strand, within IAI46_00060 at 13.558 kb on + strand, within IAI46_00060 at 13.559 kb on - strand, within IAI46_00060 at 13.559 kb on - strand, within IAI46_00060 at 13.623 kb on + strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.655 kb on + strand, within IAI46_00060 at 13.656 kb on - strand, within IAI46_00060 at 13.711 kb on - strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.822 kb on - strand, within IAI46_00060 at 13.837 kb on - strand, within IAI46_00060 at 13.855 kb on + strand, within IAI46_00060 at 13.855 kb on + strand, within IAI46_00060 at 13.856 kb on - strand, within IAI46_00060 at 13.928 kb on - strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 14.041 kb on + strand at 14.041 kb on + strand at 14.041 kb on + strand at 14.045 kb on + strand at 14.045 kb on + strand at 14.045 kb on + strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.077 kb on - strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.226 kb on + strand, within IAI46_00065 at 14.227 kb on - strand, within IAI46_00065 at 14.227 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.271 kb on + strand, within IAI46_00065 at 14.272 kb on - strand, within IAI46_00065 at 14.309 kb on + strand, within IAI46_00065 at 14.386 kb on + strand, within IAI46_00065 at 14.409 kb on + strand, within IAI46_00065 at 14.509 kb on + strand, within IAI46_00065 at 14.510 kb on - strand, within IAI46_00065 at 14.614 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.639 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.676 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.813 kb on - strand, within IAI46_00065 at 14.838 kb on + strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.995 kb on + strand, within IAI46_00065
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 11,405 + IAI46_00050 0.51 -0.7 11,421 + IAI46_00050 0.55 -0.1 11,446 + IAI46_00050 0.61 +0.1 11,447 - IAI46_00050 0.61 +0.3 11,450 + IAI46_00050 0.62 +0.3 11,450 + IAI46_00050 0.62 +0.5 11,450 + IAI46_00050 0.62 -0.6 11,451 - IAI46_00050 0.62 +0.5 11,451 - IAI46_00050 0.62 +0.1 11,451 - IAI46_00050 0.62 -0.4 11,451 - IAI46_00050 0.62 -0.0 11,451 - IAI46_00050 0.62 -0.3 11,452 + IAI46_00050 0.62 -0.2 11,452 + IAI46_00050 0.62 +0.1 11,452 + IAI46_00050 0.62 +0.0 11,453 - IAI46_00050 0.63 -0.1 11,453 - IAI46_00050 0.63 +0.6 11,515 - IAI46_00050 0.78 +0.1 11,515 - IAI46_00050 0.78 +0.1 11,545 + IAI46_00050 0.85 +0.7 11,545 + IAI46_00050 0.85 +1.0 11,545 + IAI46_00050 0.85 +0.4 11,546 - IAI46_00050 0.85 -0.3 11,546 - IAI46_00050 0.85 -1.9 11,553 + IAI46_00050 0.87 +0.7 11,592 + -0.2 11,594 + +0.5 11,594 + -0.7 11,612 + -0.9 11,613 - +0.7 11,669 + +0.8 11,669 + +0.4 11,674 + +0.1 11,675 - +0.9 11,675 - +0.4 11,679 + +0.7 11,684 + -0.9 11,685 - -0.3 11,687 - +0.1 11,698 + -0.1 11,704 + +0.3 11,719 + +0.4 11,719 + +0.9 11,720 - +1.5 11,720 - +0.5 11,720 - +0.8 11,720 - -0.0 11,720 - +0.0 11,730 + +0.5 11,730 + +0.9 11,730 + -0.5 11,730 + -0.1 11,731 - +0.9 11,741 + -1.0 11,741 + +1.4 11,741 + +0.2 11,741 + -0.4 11,835 + IAI46_00055 0.23 -0.5 11,895 - IAI46_00055 0.37 -0.7 11,895 - IAI46_00055 0.37 -0.4 11,920 + IAI46_00055 0.43 -0.5 11,941 + IAI46_00055 0.48 -0.5 11,941 + IAI46_00055 0.48 +1.5 11,942 - IAI46_00055 0.48 +0.3 11,942 - IAI46_00055 0.48 +0.2 11,979 + IAI46_00055 0.57 -0.4 11,980 - IAI46_00055 0.57 -0.5 12,080 + IAI46_00055 0.80 +0.3 12,187 + +0.4 12,188 - -0.2 12,188 - +0.5 12,191 + +0.4 12,192 - +0.8 12,192 - +0.0 12,217 + +0.1 12,218 - -0.4 12,281 + +0.6 12,281 + -0.3 12,281 + -0.3 12,282 - +0.1 12,282 - -0.2 12,282 - -0.5 12,290 + -0.7 12,291 - -1.3 12,291 - -0.3 12,312 - -0.3 12,312 - +0.2 12,315 + -0.2 12,315 + +0.4 12,315 + +0.4 12,316 - -0.4 12,316 - +0.2 12,316 - +0.3 12,332 + -0.1 12,333 - -0.1 12,388 + +0.9 12,388 + -0.7 12,388 + -0.1 12,388 + +0.2 12,389 - +0.5 12,415 + -0.0 12,415 + -0.6 12,415 + +0.3 12,415 + -0.0 12,415 + -0.7 12,416 - +0.0 12,416 - -0.7 12,455 - -0.6 12,468 - -1.0 12,468 - +0.8 12,602 + IAI46_00060 0.13 +0.1 12,602 + IAI46_00060 0.13 +0.0 12,603 - IAI46_00060 0.13 +0.1 12,603 - IAI46_00060 0.13 -0.5 12,609 + IAI46_00060 0.13 +0.6 12,609 + IAI46_00060 0.13 -0.5 12,609 + IAI46_00060 0.13 -0.6 12,609 + IAI46_00060 0.13 -0.9 12,610 - IAI46_00060 0.13 -0.4 12,610 - IAI46_00060 0.13 -3.4 12,610 - IAI46_00060 0.13 +0.6 12,610 - IAI46_00060 0.13 +0.4 12,610 - IAI46_00060 0.13 -0.1 12,610 - IAI46_00060 0.13 -0.6 12,610 - IAI46_00060 0.13 +1.1 12,610 - IAI46_00060 0.13 -0.7 12,613 + IAI46_00060 0.14 -0.2 12,613 + IAI46_00060 0.14 +0.5 12,614 - IAI46_00060 0.14 +0.1 12,614 - IAI46_00060 0.14 +0.1 12,614 - IAI46_00060 0.14 -0.0 12,866 + IAI46_00060 0.29 +0.3 12,866 + IAI46_00060 0.29 -0.3 12,866 + IAI46_00060 0.29 +0.4 12,866 + IAI46_00060 0.29 +0.0 12,866 + IAI46_00060 0.29 -0.6 12,866 + IAI46_00060 0.29 +0.5 12,867 - IAI46_00060 0.29 +0.3 12,867 - IAI46_00060 0.29 +0.2 12,878 + IAI46_00060 0.29 -0.1 12,878 + IAI46_00060 0.29 +0.8 12,921 + IAI46_00060 0.32 +0.7 12,922 - IAI46_00060 0.32 +0.3 12,922 - IAI46_00060 0.32 +1.4 12,922 - IAI46_00060 0.32 -0.2 12,922 - IAI46_00060 0.32 +0.1 13,081 + IAI46_00060 0.42 -0.8 13,081 + IAI46_00060 0.42 +0.0 13,081 + IAI46_00060 0.42 -0.5 13,082 - IAI46_00060 0.42 +0.3 13,082 - IAI46_00060 0.42 -0.4 13,082 - IAI46_00060 0.42 -1.2 13,084 + IAI46_00060 0.42 +0.2 13,084 + IAI46_00060 0.42 -0.3 13,084 + IAI46_00060 0.42 -0.2 13,084 + IAI46_00060 0.42 -0.1 13,084 + IAI46_00060 0.42 +0.4 13,084 + IAI46_00060 0.42 -0.2 13,084 + IAI46_00060 0.42 -0.5 13,084 + IAI46_00060 0.42 -0.0 13,085 - IAI46_00060 0.42 -0.9 13,085 - IAI46_00060 0.42 -0.2 13,085 - IAI46_00060 0.42 -0.0 13,158 - IAI46_00060 0.46 +0.3 13,158 - IAI46_00060 0.46 -0.1 13,392 + IAI46_00060 0.60 -0.3 13,392 + IAI46_00060 0.60 +0.3 13,393 - IAI46_00060 0.61 -0.3 13,393 - IAI46_00060 0.61 -0.5 13,393 - IAI46_00060 0.61 +0.9 13,393 - IAI46_00060 0.61 +0.7 13,393 - IAI46_00060 0.61 -0.4 13,393 - IAI46_00060 0.61 -0.1 13,393 - IAI46_00060 0.61 +0.8 13,393 - IAI46_00060 0.61 +0.1 13,393 - IAI46_00060 0.61 -0.4 13,534 - IAI46_00060 0.69 -0.0 13,558 + IAI46_00060 0.70 -0.7 13,559 - IAI46_00060 0.71 +0.5 13,559 - IAI46_00060 0.71 -0.1 13,623 + IAI46_00060 0.74 +1.0 13,624 - IAI46_00060 0.74 -0.4 13,624 - IAI46_00060 0.74 +0.0 13,624 - IAI46_00060 0.74 +0.3 13,655 + IAI46_00060 0.76 +0.9 13,656 - IAI46_00060 0.76 +0.0 13,711 - IAI46_00060 0.80 +0.7 13,765 + IAI46_00060 0.83 -0.4 13,765 + IAI46_00060 0.83 +0.1 13,765 + IAI46_00060 0.83 +0.4 13,822 - IAI46_00060 0.86 -0.2 13,837 - IAI46_00060 0.87 -0.5 13,855 + IAI46_00060 0.88 -0.3 13,855 + IAI46_00060 0.88 +0.3 13,856 - IAI46_00060 0.88 +0.8 13,928 - +0.1 13,977 + -0.8 13,977 + +1.2 13,977 + +1.3 13,977 + +0.7 13,977 + +0.1 13,977 + +0.2 13,978 - -0.1 13,978 - +0.5 13,978 - -1.1 13,978 - +0.2 13,978 - +0.6 13,978 - -0.1 13,978 - +0.1 14,041 + +0.1 14,041 + +0.0 14,041 + +0.7 14,045 + -0.3 14,045 + +1.1 14,045 + -0.4 14,046 - +0.3 14,046 - -0.6 14,046 - -0.4 14,046 - -0.2 14,077 - +0.0 14,166 + +0.5 14,166 + +0.5 14,167 - +0.1 14,167 - -1.1 14,167 - -0.2 14,167 - +1.1 14,167 - +0.0 14,167 - -1.6 14,167 - +0.0 14,167 - -0.1 14,167 - -2.6 14,191 + +1.4 14,191 + -0.4 14,191 + +0.2 14,191 + +0.0 14,191 + +0.8 14,191 + -0.6 14,192 - +1.5 14,192 - -0.9 14,192 - +1.2 14,192 - -0.4 14,192 - -0.0 14,226 + IAI46_00065 0.11 +0.5 14,227 - IAI46_00065 0.11 +0.8 14,227 - IAI46_00065 0.11 -0.5 14,244 - IAI46_00065 0.13 +0.1 14,244 - IAI46_00065 0.13 +0.0 14,244 - IAI46_00065 0.13 -0.2 14,271 + IAI46_00065 0.15 -0.1 14,272 - IAI46_00065 0.15 +0.6 14,309 + IAI46_00065 0.18 +0.2 14,386 + IAI46_00065 0.24 -0.7 14,409 + IAI46_00065 0.26 +0.1 14,509 + IAI46_00065 0.34 -0.3 14,510 - IAI46_00065 0.34 +0.8 14,614 + IAI46_00065 0.42 -0.2 14,638 + IAI46_00065 0.44 +0.9 14,638 + IAI46_00065 0.44 +0.4 14,639 - IAI46_00065 0.44 +0.5 14,654 - IAI46_00065 0.45 +0.7 14,654 - IAI46_00065 0.45 -2.1 14,676 + IAI46_00065 0.47 -0.5 14,753 + IAI46_00065 0.53 -0.7 14,753 + IAI46_00065 0.53 +0.7 14,753 + IAI46_00065 0.53 -0.1 14,754 - IAI46_00065 0.53 +0.2 14,754 - IAI46_00065 0.53 +0.1 14,813 - IAI46_00065 0.58 +0.6 14,838 + IAI46_00065 0.60 -0.8 14,839 - IAI46_00065 0.60 -1.0 14,839 - IAI46_00065 0.60 +0.1 14,927 - IAI46_00065 0.67 +0.1 14,927 - IAI46_00065 0.67 -0.4 14,928 + IAI46_00065 0.67 +0.4 14,928 + IAI46_00065 0.67 -0.5 14,929 - IAI46_00065 0.67 +1.7 14,929 - IAI46_00065 0.67 -0.6 14,977 - IAI46_00065 0.71 -0.5 14,977 - IAI46_00065 0.71 -0.4 14,995 + IAI46_00065 0.73 -0.4
Or see this region's nucleotide sequence