Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3272

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3271 and Echvi_3272 are separated by 144 nucleotidesEchvi_3272 and Echvi_3273 are separated by 333 nucleotides Echvi_3271: Echvi_3271 - 3-oxoacid CoA-transferase, B subunit, at 3,876,285 to 3,876,941 _3271 Echvi_3272: Echvi_3272 - 3-oxoacid CoA-transferase, A subunit, at 3,877,086 to 3,877,778 _3272 Echvi_3273: Echvi_3273 - riboflavin kinase/FMN adenylyltransferase, at 3,878,112 to 3,879,041 _3273 Position (kb) 3877 3878Strain fitness (log2 ratio) -2 -1 0 1 2at 3876.115 kb on + strandat 3876.184 kb on - strandat 3876.184 kb on - strandat 3876.190 kb on - strandat 3876.192 kb on + strandat 3876.192 kb on + strandat 3876.193 kb on - strandat 3876.193 kb on - strandat 3876.207 kb on + strandat 3876.214 kb on + strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.217 kb on + strandat 3876.217 kb on + strandat 3876.218 kb on - strandat 3876.265 kb on + strandat 3876.265 kb on + strandat 3876.266 kb on - strandat 3876.266 kb on - strandat 3876.277 kb on + strandat 3876.278 kb on - strandat 3876.354 kb on + strand, within Echvi_3271at 3876.416 kb on - strand, within Echvi_3271at 3876.819 kb on + strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.841 kb on + strand, within Echvi_3271at 3876.841 kb on + strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.867 kb on + strand, within Echvi_3271at 3876.970 kb on - strandat 3876.978 kb on + strandat 3876.983 kb on + strandat 3876.983 kb on + strandat 3876.997 kb on - strandat 3877.147 kb on - strandat 3877.223 kb on + strand, within Echvi_3272at 3877.223 kb on + strand, within Echvi_3272at 3877.276 kb on + strand, within Echvi_3272at 3877.276 kb on + strandat 3877.354 kb on + strand, within Echvi_3272at 3877.547 kb on - strand, within Echvi_3272at 3877.713 kb on + strandat 3877.770 kb on - strandat 3877.779 kb on - strandat 3877.792 kb on - strandat 3877.975 kb on + strandat 3877.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,876,115 + +0.1
3,876,184 - -0.9
3,876,184 - -0.5
3,876,190 - +1.4
3,876,192 + -0.2
3,876,192 + -0.0
3,876,193 - +2.0
3,876,193 - -0.3
3,876,207 + +0.1
3,876,214 + +0.5
3,876,215 - +0.4
3,876,215 - +0.4
3,876,215 - +0.3
3,876,215 - -1.3
3,876,215 - -1.1
3,876,217 + +0.8
3,876,217 + +0.6
3,876,218 - +0.6
3,876,265 + +0.8
3,876,265 + +0.1
3,876,266 - -0.0
3,876,266 - +1.1
3,876,277 + -0.4
3,876,278 - +0.4
3,876,354 + Echvi_3271 0.11 -0.6
3,876,416 - Echvi_3271 0.20 -1.9
3,876,819 + Echvi_3271 0.81 +1.3
3,876,820 - Echvi_3271 0.81 -0.1
3,876,820 - Echvi_3271 0.81 -0.2
3,876,820 - Echvi_3271 0.81 +1.8
3,876,841 + Echvi_3271 0.85 -0.2
3,876,841 + Echvi_3271 0.85 +1.1
3,876,842 - Echvi_3271 0.85 -0.2
3,876,842 - Echvi_3271 0.85 -1.9
3,876,842 - Echvi_3271 0.85 -1.2
3,876,867 + Echvi_3271 0.89 -0.7
3,876,970 - -2.3
3,876,978 + +0.2
3,876,983 + +0.8
3,876,983 + -1.1
3,876,997 - +0.7
3,877,147 - -0.3
3,877,223 + Echvi_3272 0.20 -1.0
3,877,223 + Echvi_3272 0.20 -0.8
3,877,276 + Echvi_3272 0.27 +0.2
3,877,276 + +0.4
3,877,354 + Echvi_3272 0.39 -0.9
3,877,547 - Echvi_3272 0.67 -0.6
3,877,713 + -0.7
3,877,770 - +0.9
3,877,779 - -0.0
3,877,792 - -0.3
3,877,975 + +0.3
3,877,976 - -0.2

Or see this region's nucleotide sequence