Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4464 and EX28DRAFT_4465 are separated by 102 nucleotides EX28DRAFT_4465 and EX28DRAFT_4466 are separated by 67 nucleotides EX28DRAFT_4466 and EX28DRAFT_4467 are separated by 22 nucleotides EX28DRAFT_4467 and EX28DRAFT_4468 are separated by 46 nucleotides EX28DRAFT_4468 and EX28DRAFT_4469 are separated by 299 nucleotides EX28DRAFT_4469 and EX28DRAFT_4470 are separated by 5 nucleotides
EX28DRAFT_4464: EX28DRAFT_4464 - Gamma-aminobutyrate permease and related permeases, at 31,816 to 33,201
_4464
EX28DRAFT_4465: EX28DRAFT_4465 - tRNA, at 33,304 to 33,380
_4465
EX28DRAFT_4466: EX28DRAFT_4466 - tRNA, at 33,448 to 33,523
_4466
EX28DRAFT_4467: EX28DRAFT_4467 - tRNA, at 33,546 to 33,631
_4467
EX28DRAFT_4468: EX28DRAFT_4468 - tRNA, at 33,678 to 33,754
_4468
EX28DRAFT_4469: EX28DRAFT_4469 - RNA, at 34,054 to 34,256
_4469
EX28DRAFT_4470: EX28DRAFT_4470 - hypothetical protein, at 34,262 to 35,473
_4470
Position (kb) 33
34 Strain fitness (log2 ratio) -1
0
1 at 32.712 kb on + strand, within EX28DRAFT_4464 at 32.713 kb on - strand, within EX28DRAFT_4464 at 32.725 kb on + strand, within EX28DRAFT_4464 at 32.726 kb on - strand, within EX28DRAFT_4464 at 32.726 kb on - strand, within EX28DRAFT_4464 at 32.740 kb on - strand, within EX28DRAFT_4464 at 32.747 kb on - strand, within EX28DRAFT_4464 at 32.787 kb on + strand, within EX28DRAFT_4464 at 32.899 kb on + strand, within EX28DRAFT_4464 at 32.900 kb on - strand, within EX28DRAFT_4464 at 32.900 kb on - strand, within EX28DRAFT_4464 at 33.037 kb on + strand, within EX28DRAFT_4464 at 33.037 kb on + strand, within EX28DRAFT_4464 at 33.038 kb on - strand, within EX28DRAFT_4464 at 33.069 kb on - strand at 33.085 kb on - strand at 33.148 kb on + strand at 33.150 kb on + strand at 33.150 kb on + strand at 33.151 kb on - strand at 33.151 kb on - strand at 33.151 kb on - strand at 33.525 kb on + strand at 33.587 kb on + strand, within EX28DRAFT_4467 at 33.891 kb on - strand at 33.891 kb on - strand at 34.044 kb on + strand at 34.055 kb on + strand at 34.055 kb on + strand at 34.055 kb on + strand at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.076 kb on - strand, within EX28DRAFT_4469 at 34.076 kb on - strand, within EX28DRAFT_4469 at 34.123 kb on + strand, within EX28DRAFT_4469 at 34.203 kb on + strand, within EX28DRAFT_4469 at 34.203 kb on + strand, within EX28DRAFT_4469 at 34.204 kb on - strand, within EX28DRAFT_4469 at 34.204 kb on - strand, within EX28DRAFT_4469 at 34.240 kb on - strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.325 kb on + strand at 34.334 kb on + strand at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.530 kb on - strand, within EX28DRAFT_4470 at 34.596 kb on - strand, within EX28DRAFT_4470
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 32,712 + EX28DRAFT_4464 0.65 -0.7 32,713 - EX28DRAFT_4464 0.65 -0.4 32,725 + EX28DRAFT_4464 0.66 +0.7 32,726 - EX28DRAFT_4464 0.66 +0.2 32,726 - EX28DRAFT_4464 0.66 +0.1 32,740 - EX28DRAFT_4464 0.67 +0.1 32,747 - EX28DRAFT_4464 0.67 +0.1 32,787 + EX28DRAFT_4464 0.70 +0.5 32,899 + EX28DRAFT_4464 0.78 +0.9 32,900 - EX28DRAFT_4464 0.78 -0.4 32,900 - EX28DRAFT_4464 0.78 +1.1 33,037 + EX28DRAFT_4464 0.88 +0.4 33,037 + EX28DRAFT_4464 0.88 +0.6 33,038 - EX28DRAFT_4464 0.88 -0.4 33,069 - +0.1 33,085 - -0.3 33,148 + -0.4 33,150 + +0.2 33,150 + -0.4 33,151 - -0.4 33,151 - -0.3 33,151 - -0.1 33,525 + +1.1 33,587 + EX28DRAFT_4467 0.48 +0.3 33,891 - +0.7 33,891 - +0.2 34,044 + +0.3 34,055 + +0.0 34,055 + -0.1 34,055 + -0.9 34,075 + EX28DRAFT_4469 0.10 +0.0 34,075 + EX28DRAFT_4469 0.10 -0.2 34,075 + EX28DRAFT_4469 0.10 -0.1 34,075 + EX28DRAFT_4469 0.10 -0.1 34,075 + EX28DRAFT_4469 0.10 +0.3 34,076 - EX28DRAFT_4469 0.11 -0.2 34,076 - EX28DRAFT_4469 0.11 +0.2 34,123 + EX28DRAFT_4469 0.34 +0.3 34,203 + EX28DRAFT_4469 0.73 +0.2 34,203 + EX28DRAFT_4469 0.73 +0.4 34,204 - EX28DRAFT_4469 0.74 +0.0 34,204 - EX28DRAFT_4469 0.74 +0.2 34,240 - -0.4 34,323 + -0.1 34,323 + +0.4 34,323 + +0.2 34,323 + +0.7 34,324 - -0.2 34,324 - -0.1 34,324 - -0.2 34,324 - -0.0 34,325 + +1.4 34,334 + -0.1 34,529 + EX28DRAFT_4470 0.22 +0.4 34,529 + EX28DRAFT_4470 0.22 -0.2 34,529 + EX28DRAFT_4470 0.22 +0.3 34,530 - EX28DRAFT_4470 0.22 -0.2 34,596 - EX28DRAFT_4470 0.28 +0.8
Or see this region's nucleotide sequence