Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4404

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4403 and EX28DRAFT_4404 are separated by 68 nucleotidesEX28DRAFT_4404 and EX28DRAFT_4405 are separated by 9 nucleotidesEX28DRAFT_4405 and EX28DRAFT_4406 are separated by 94 nucleotides EX28DRAFT_4403: EX28DRAFT_4403 - 1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74), at 65,214 to 66,134 _4403 EX28DRAFT_4404: EX28DRAFT_4404 - ATP-dependent protease HslVU, ATPase subunit, at 66,203 to 67,537 _4404 EX28DRAFT_4405: EX28DRAFT_4405 - ATP-dependent protease HslVU, peptidase subunit, at 67,547 to 68,077 _4405 EX28DRAFT_4406: EX28DRAFT_4406 - cell division protein FtsN, at 68,172 to 69,065 _4406 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.215 kb on + strandat 65.319 kb on - strand, within EX28DRAFT_4403at 65.612 kb on + strand, within EX28DRAFT_4403at 65.613 kb on - strand, within EX28DRAFT_4403at 65.626 kb on + strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.692 kb on + strand, within EX28DRAFT_4403at 65.692 kb on + strand, within EX28DRAFT_4403at 65.693 kb on - strand, within EX28DRAFT_4403at 65.693 kb on - strand, within EX28DRAFT_4403at 65.698 kb on + strand, within EX28DRAFT_4403at 65.719 kb on + strand, within EX28DRAFT_4403at 65.720 kb on - strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.840 kb on + strand, within EX28DRAFT_4403at 65.870 kb on + strand, within EX28DRAFT_4403at 65.905 kb on - strand, within EX28DRAFT_4403at 66.134 kb on + strandat 66.134 kb on + strandat 66.135 kb on - strandat 66.135 kb on - strandat 66.138 kb on + strandat 66.138 kb on + strandat 66.138 kb on + strandat 66.139 kb on - strandat 66.206 kb on + strandat 66.206 kb on + strandat 66.206 kb on + strandat 66.207 kb on - strandat 66.212 kb on - strandat 66.264 kb on + strandat 66.264 kb on + strandat 66.313 kb on - strandat 66.313 kb on - strandat 66.320 kb on - strandat 66.410 kb on - strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.472 kb on - strand, within EX28DRAFT_4404at 66.472 kb on - strand, within EX28DRAFT_4404at 66.476 kb on + strand, within EX28DRAFT_4404at 66.477 kb on - strand, within EX28DRAFT_4404at 66.477 kb on - strand, within EX28DRAFT_4404at 66.509 kb on - strand, within EX28DRAFT_4404at 66.874 kb on + strand, within EX28DRAFT_4404at 66.875 kb on - strand, within EX28DRAFT_4404at 67.266 kb on + strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.426 kb on + strandat 67.548 kb on + strandat 67.549 kb on - strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.594 kb on - strandat 68.003 kb on - strand, within EX28DRAFT_4405at 68.063 kb on + strandat 68.063 kb on + strandat 68.063 kb on + strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.066 kb on + strandat 68.066 kb on + strandat 68.066 kb on + strandat 68.067 kb on - strandat 68.142 kb on - strandat 68.148 kb on + strandat 68.149 kb on - strandat 68.149 kb on - strandat 68.300 kb on + strand, within EX28DRAFT_4406at 68.300 kb on + strand, within EX28DRAFT_4406at 68.301 kb on - strand, within EX28DRAFT_4406at 68.301 kb on - strand, within EX28DRAFT_4406at 68.486 kb on + strand, within EX28DRAFT_4406

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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65,215 + -0.4
65,319 - EX28DRAFT_4403 0.11 +0.9
65,612 + EX28DRAFT_4403 0.43 +1.0
65,613 - EX28DRAFT_4403 0.43 +0.2
65,626 + EX28DRAFT_4403 0.45 -0.1
65,691 - EX28DRAFT_4403 0.52 +0.5
65,691 - EX28DRAFT_4403 0.52 +0.1
65,691 - EX28DRAFT_4403 0.52 -0.4
65,692 + EX28DRAFT_4403 0.52 -0.0
65,692 + EX28DRAFT_4403 0.52 +0.4
65,693 - EX28DRAFT_4403 0.52 +0.6
65,693 - EX28DRAFT_4403 0.52 +0.3
65,698 + EX28DRAFT_4403 0.53 +1.0
65,719 + EX28DRAFT_4403 0.55 +0.3
65,720 - EX28DRAFT_4403 0.55 +0.3
65,786 + EX28DRAFT_4403 0.62 +0.8
65,786 + EX28DRAFT_4403 0.62 -0.2
65,786 + EX28DRAFT_4403 0.62 -0.8
65,840 + EX28DRAFT_4403 0.68 +0.2
65,870 + EX28DRAFT_4403 0.71 +0.5
65,905 - EX28DRAFT_4403 0.75 +0.3
66,134 + +0.8
66,134 + -0.1
66,135 - +0.1
66,135 - -1.1
66,138 + +0.4
66,138 + +0.3
66,138 + +0.1
66,139 - -0.4
66,206 + +0.5
66,206 + -0.6
66,206 + +0.2
66,207 - -0.2
66,212 - -0.4
66,264 + -0.1
66,264 + -0.1
66,313 - -0.2
66,313 - -0.2
66,320 - -0.2
66,410 - EX28DRAFT_4404 0.16 -1.2
66,471 + EX28DRAFT_4404 0.20 -0.1
66,471 + EX28DRAFT_4404 0.20 +0.1
66,471 + EX28DRAFT_4404 0.20 +0.9
66,472 - EX28DRAFT_4404 0.20 -1.2
66,472 - EX28DRAFT_4404 0.20 +2.0
66,476 + EX28DRAFT_4404 0.20 -0.5
66,477 - EX28DRAFT_4404 0.21 -0.5
66,477 - EX28DRAFT_4404 0.21 -0.1
66,509 - EX28DRAFT_4404 0.23 -0.1
66,874 + EX28DRAFT_4404 0.50 +0.3
66,875 - EX28DRAFT_4404 0.50 +0.4
67,266 + EX28DRAFT_4404 0.80 +0.5
67,267 - EX28DRAFT_4404 0.80 +1.5
67,267 - EX28DRAFT_4404 0.80 -0.4
67,267 - EX28DRAFT_4404 0.80 +1.3
67,426 + -1.0
67,548 + -1.4
67,549 - -0.4
67,593 + +0.1
67,593 + -0.4
67,593 + -0.4
67,593 + +2.0
67,594 - -0.5
68,003 - EX28DRAFT_4405 0.86 -0.2
68,063 + -0.5
68,063 + -0.7
68,063 + -0.0
68,064 - -0.1
68,064 - -0.5
68,064 - -0.1
68,064 - -0.0
68,066 + -0.2
68,066 + -2.3
68,066 + -0.6
68,067 - -0.6
68,142 - -0.4
68,148 + -0.1
68,149 - +0.5
68,149 - +0.7
68,300 + EX28DRAFT_4406 0.14 -1.4
68,300 + EX28DRAFT_4406 0.14 -0.6
68,301 - EX28DRAFT_4406 0.14 -3.5
68,301 - EX28DRAFT_4406 0.14 -1.8
68,486 + EX28DRAFT_4406 0.35 -0.7

Or see this region's nucleotide sequence