Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4246 and EX28DRAFT_4247 are separated by 3 nucleotides EX28DRAFT_4247 and EX28DRAFT_4248 are separated by 2 nucleotides EX28DRAFT_4248 and EX28DRAFT_4249 are separated by 113 nucleotides EX28DRAFT_4249 and EX28DRAFT_4250 are separated by 217 nucleotides
EX28DRAFT_4246: EX28DRAFT_4246 - excinuclease ABC, A subunit, at 52,582 to 55,404
_4246
EX28DRAFT_4247: EX28DRAFT_4247 - Uncharacterized protein conserved in bacteria, at 55,408 to 55,761
_4247
EX28DRAFT_4248: EX28DRAFT_4248 - secondary thiamine-phosphate synthase enzyme, at 55,764 to 56,180
_4248
EX28DRAFT_4249: EX28DRAFT_4249 - HAD superfamily (subfamily IIIB) phosphatase, TIGR01672, at 56,294 to 57,007
_4249
EX28DRAFT_4250: EX28DRAFT_4250 - Aspartate/tyrosine/aromatic aminotransferase, at 57,225 to 58,418
_4250
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.402 kb on + strand at 55.464 kb on - strand, within EX28DRAFT_4247 at 55.482 kb on - strand, within EX28DRAFT_4247 at 55.485 kb on - strand, within EX28DRAFT_4247 at 55.485 kb on - strand, within EX28DRAFT_4247 at 55.517 kb on + strand, within EX28DRAFT_4247 at 55.674 kb on + strand, within EX28DRAFT_4247 at 55.745 kb on - strand at 55.776 kb on + strand at 55.776 kb on + strand at 55.777 kb on - strand at 55.793 kb on + strand at 55.907 kb on + strand, within EX28DRAFT_4248 at 55.907 kb on + strand, within EX28DRAFT_4248 at 55.952 kb on - strand, within EX28DRAFT_4248 at 56.154 kb on + strand at 56.154 kb on + strand at 56.213 kb on - strand at 56.265 kb on - strand at 56.295 kb on + strand at 56.298 kb on + strand at 56.298 kb on + strand at 56.375 kb on + strand, within EX28DRAFT_4249 at 56.376 kb on - strand, within EX28DRAFT_4249 at 56.376 kb on - strand, within EX28DRAFT_4249 at 56.444 kb on + strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.518 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.608 kb on - strand, within EX28DRAFT_4249 at 56.641 kb on + strand, within EX28DRAFT_4249 at 56.725 kb on - strand, within EX28DRAFT_4249 at 56.745 kb on + strand, within EX28DRAFT_4249 at 56.746 kb on - strand, within EX28DRAFT_4249 at 56.956 kb on + strand at 56.957 kb on - strand at 56.969 kb on + strand at 56.969 kb on + strand at 56.970 kb on - strand at 57.050 kb on + strand at 57.227 kb on - strand at 57.293 kb on + strand at 57.294 kb on - strand at 57.294 kb on - strand at 57.367 kb on + strand, within EX28DRAFT_4250 at 57.408 kb on - strand, within EX28DRAFT_4250 at 57.484 kb on - strand, within EX28DRAFT_4250 at 57.484 kb on - strand, within EX28DRAFT_4250 at 57.568 kb on + strand, within EX28DRAFT_4250 at 57.775 kb on + strand, within EX28DRAFT_4250 at 57.816 kb on + strand, within EX28DRAFT_4250 at 57.817 kb on - strand, within EX28DRAFT_4250
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 55,402 + -0.6 55,464 - EX28DRAFT_4247 0.16 +0.1 55,482 - EX28DRAFT_4247 0.21 +0.8 55,485 - EX28DRAFT_4247 0.22 -0.2 55,485 - EX28DRAFT_4247 0.22 -0.3 55,517 + EX28DRAFT_4247 0.31 -0.6 55,674 + EX28DRAFT_4247 0.75 -0.2 55,745 - -1.6 55,776 + -0.1 55,776 + -0.2 55,777 - +0.3 55,793 + +0.3 55,907 + EX28DRAFT_4248 0.34 +0.4 55,907 + EX28DRAFT_4248 0.34 +1.0 55,952 - EX28DRAFT_4248 0.45 -0.6 56,154 + +0.1 56,154 + -0.1 56,213 - -0.5 56,265 - -0.3 56,295 + -0.9 56,298 + +0.3 56,298 + -0.4 56,375 + EX28DRAFT_4249 0.11 -0.2 56,376 - EX28DRAFT_4249 0.11 +1.5 56,376 - EX28DRAFT_4249 0.11 +0.5 56,444 + EX28DRAFT_4249 0.21 -0.1 56,445 - EX28DRAFT_4249 0.21 +0.1 56,445 - EX28DRAFT_4249 0.21 +0.8 56,445 - EX28DRAFT_4249 0.21 -0.5 56,518 + EX28DRAFT_4249 0.31 +0.2 56,607 + EX28DRAFT_4249 0.44 +0.1 56,607 + EX28DRAFT_4249 0.44 +0.9 56,607 + EX28DRAFT_4249 0.44 -0.2 56,608 - EX28DRAFT_4249 0.44 +0.4 56,641 + EX28DRAFT_4249 0.49 -0.4 56,725 - EX28DRAFT_4249 0.60 -0.2 56,745 + EX28DRAFT_4249 0.63 +0.5 56,746 - EX28DRAFT_4249 0.63 -0.2 56,956 + -0.7 56,957 - +0.4 56,969 + -0.2 56,969 + +0.4 56,970 - -0.3 57,050 + +0.9 57,227 - +0.3 57,293 + -0.4 57,294 - -0.6 57,294 - -0.2 57,367 + EX28DRAFT_4250 0.12 -0.1 57,408 - EX28DRAFT_4250 0.15 -1.2 57,484 - EX28DRAFT_4250 0.22 +0.0 57,484 - EX28DRAFT_4250 0.22 -0.6 57,568 + EX28DRAFT_4250 0.29 -0.8 57,775 + EX28DRAFT_4250 0.46 -0.6 57,816 + EX28DRAFT_4250 0.49 -0.4 57,817 - EX28DRAFT_4250 0.50 +0.6
Or see this region's nucleotide sequence