Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4224 and EX28DRAFT_4225 are separated by 2 nucleotides EX28DRAFT_4225 and EX28DRAFT_4226 are separated by 256 nucleotides EX28DRAFT_4226 and EX28DRAFT_4227 overlap by 1736 nucleotides EX28DRAFT_4227 and EX28DRAFT_4228 are separated by 1856 nucleotides EX28DRAFT_4228 and EX28DRAFT_4229 overlap by 3 nucleotides EX28DRAFT_4229 and EX28DRAFT_4230 are separated by 121 nucleotides
EX28DRAFT_4224: EX28DRAFT_4224 - Predicted double-glycine peptidase, at 30,949 to 31,476
_4224
EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210
_4225
EX28DRAFT_4226: EX28DRAFT_4226 - formate dehydrogenase alpha subunit (EC 1.2.1.2), at 32,467 to 34,614
_4226
EX28DRAFT_4227: EX28DRAFT_4227 - RNA, at 32,879 to 32,933
_4227
EX28DRAFT_4228: EX28DRAFT_4228 - RNA, at 34,790 to 34,940
_4228
EX28DRAFT_4229: EX28DRAFT_4229 - Hok/gef family, at 34,938 to 35,090
_4229
EX28DRAFT_4230: EX28DRAFT_4230 - Sel1 repeat, at 35,212 to 35,886
_4230
Position (kb)
32
33
34
35 Strain fitness (log2 ratio)
-1
0
1 at 31.475 kb on + strand at 31.477 kb on + strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.480 kb on + strand at 31.481 kb on - strand at 31.481 kb on - strand at 31.523 kb on - strand at 31.715 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225 at 32.048 kb on + strand, within EX28DRAFT_4225 at 32.187 kb on + strand at 32.187 kb on + strand at 32.187 kb on + strand at 32.187 kb on + strand at 32.188 kb on - strand at 32.188 kb on - strand at 32.188 kb on - strand at 32.232 kb on + strand at 32.233 kb on - strand at 32.395 kb on - strand at 32.429 kb on + strand at 32.605 kb on + strand at 32.605 kb on + strand at 32.606 kb on - strand at 32.623 kb on - strand at 32.758 kb on + strand, within EX28DRAFT_4226 at 32.758 kb on + strand, within EX28DRAFT_4226 at 32.818 kb on + strand, within EX28DRAFT_4226 at 32.818 kb on + strand, within EX28DRAFT_4226 at 32.818 kb on + strand, within EX28DRAFT_4226 at 32.819 kb on - strand, within EX28DRAFT_4226 at 32.819 kb on - strand, within EX28DRAFT_4226 at 32.819 kb on - strand, within EX28DRAFT_4226 at 32.957 kb on + strand at 32.958 kb on - strand at 32.962 kb on - strand at 32.962 kb on - strand at 32.989 kb on + strand at 33.168 kb on + strand at 33.319 kb on + strand at 33.320 kb on - strand at 33.462 kb on - strand at 33.533 kb on - strand at 33.661 kb on + strand at 33.661 kb on + strand at 33.753 kb on + strand at 33.753 kb on + strand at 33.755 kb on - strand at 34.004 kb on - strand at 34.015 kb on + strand at 34.039 kb on + strand at 34.090 kb on + strand at 34.099 kb on - strand at 34.183 kb on + strand at 34.286 kb on - strand at 34.426 kb on + strand at 34.427 kb on - strand at 34.427 kb on - strand at 34.472 kb on + strand at 34.472 kb on + strand at 34.472 kb on + strand at 34.473 kb on - strand at 34.500 kb on + strand at 34.501 kb on - strand at 34.555 kb on + strand at 34.555 kb on + strand at 34.570 kb on + strand at 34.572 kb on + strand at 34.650 kb on + strand at 34.930 kb on + strand at 34.930 kb on + strand at 34.974 kb on - strand, within EX28DRAFT_4229 at 35.142 kb on + strand at 35.176 kb on + strand at 35.177 kb on - strand at 35.203 kb on + strand at 35.204 kb on - strand at 35.221 kb on - strand at 35.244 kb on + strand at 35.323 kb on + strand, within EX28DRAFT_4230 at 35.334 kb on + strand, within EX28DRAFT_4230 at 35.335 kb on - strand, within EX28DRAFT_4230 at 35.338 kb on + strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.463 kb on + strand, within EX28DRAFT_4230
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 31,475 + +0.1 31,477 + -0.1 31,478 - +0.6 31,478 - -0.7 31,478 - -0.2 31,480 + -1.2 31,481 - +0.0 31,481 - +0.7 31,523 - -0.8 31,715 - EX28DRAFT_4225 0.32 +0.2 31,910 - EX28DRAFT_4225 0.59 +0.8 31,910 - EX28DRAFT_4225 0.59 -0.4 32,048 + EX28DRAFT_4225 0.78 +0.2 32,187 + -0.5 32,187 + +0.0 32,187 + -0.1 32,187 + +0.3 32,188 - +0.4 32,188 - -0.1 32,188 - -0.1 32,232 + +0.2 32,233 - +1.1 32,395 - +0.1 32,429 + +0.3 32,605 + +0.3 32,605 + -0.2 32,606 - +0.2 32,623 - +0.1 32,758 + EX28DRAFT_4226 0.14 +0.4 32,758 + EX28DRAFT_4226 0.14 +0.0 32,818 + EX28DRAFT_4226 0.16 -0.4 32,818 + EX28DRAFT_4226 0.16 +0.7 32,818 + EX28DRAFT_4226 0.16 +0.2 32,819 - EX28DRAFT_4226 0.16 +0.0 32,819 - EX28DRAFT_4226 0.16 -0.5 32,819 - EX28DRAFT_4226 0.16 -0.0 32,957 + +0.3 32,958 - +1.2 32,962 - -0.1 32,962 - +0.2 32,989 + +0.7 33,168 + -0.2 33,319 + +0.3 33,320 - +0.0 33,462 - -0.0 33,533 - -0.3 33,661 + +0.6 33,661 + -0.7 33,753 + +0.3 33,753 + -0.2 33,755 - -0.5 34,004 - +0.1 34,015 + +0.4 34,039 + -0.4 34,090 + -0.4 34,099 - -0.1 34,183 + -0.2 34,286 - -0.1 34,426 + -0.3 34,427 - -0.2 34,427 - -1.2 34,472 + -0.8 34,472 + -0.2 34,472 + -0.8 34,473 - -0.5 34,500 + +0.6 34,501 - -0.0 34,555 + +0.6 34,555 + +1.3 34,570 + -0.1 34,572 + +0.0 34,650 + +0.2 34,930 + +0.6 34,930 + -0.1 34,974 - EX28DRAFT_4229 0.24 +0.2 35,142 + +0.1 35,176 + -0.2 35,177 - -0.2 35,203 + -0.6 35,204 - +1.2 35,221 - -0.5 35,244 + +0.3 35,323 + EX28DRAFT_4230 0.16 -1.1 35,334 + EX28DRAFT_4230 0.18 -1.1 35,335 - EX28DRAFT_4230 0.18 -0.5 35,338 + EX28DRAFT_4230 0.19 -0.4 35,339 - EX28DRAFT_4230 0.19 +0.0 35,339 - EX28DRAFT_4230 0.19 +0.8 35,339 - EX28DRAFT_4230 0.19 +0.2 35,339 - EX28DRAFT_4230 0.19 +0.6 35,339 - EX28DRAFT_4230 0.19 -0.1 35,339 - EX28DRAFT_4230 0.19 -0.4 35,339 - EX28DRAFT_4230 0.19 -0.1 35,339 - EX28DRAFT_4230 0.19 -1.6 35,463 + EX28DRAFT_4230 0.37 +0.1
Or see this region's nucleotide sequence