Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4151

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotidesEX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotidesEX28DRAFT_4150 and EX28DRAFT_4151 overlap by 11 nucleotidesEX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotidesEX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041 _4148 EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500 _4149 EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894 _4150 EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044 _4151 EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852 _4152 EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998 _4153 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 131.027 kb on - strandat 131.059 kb on - strandat 131.459 kb on - strandat 131.533 kb on + strand, within EX28DRAFT_4150at 131.533 kb on + strand, within EX28DRAFT_4150at 131.647 kb on + strand, within EX28DRAFT_4150at 131.801 kb on + strand, within EX28DRAFT_4150at 131.904 kb on - strandat 132.182 kb on - strand, within EX28DRAFT_4151at 132.364 kb on - strand, within EX28DRAFT_4151at 132.364 kb on - strand, within EX28DRAFT_4151at 132.364 kb on - strand, within EX28DRAFT_4151at 132.780 kb on + strand, within EX28DRAFT_4151at 132.842 kb on + strand, within EX28DRAFT_4151at 132.842 kb on + strand, within EX28DRAFT_4151at 133.005 kb on - strandat 133.015 kb on - strandat 133.015 kb on - strandat 133.018 kb on - strandat 133.111 kb on + strandat 133.112 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.145 kb on - strandat 133.151 kb on + strandat 133.151 kb on + strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.159 kb on + strandat 133.181 kb on - strandat 133.237 kb on + strandat 133.238 kb on - strandat 133.244 kb on + strandat 133.244 kb on + strandat 133.315 kb on + strandat 133.318 kb on + strandat 133.349 kb on - strandat 133.488 kb on + strand, within EX28DRAFT_4152at 133.634 kb on + strand, within EX28DRAFT_4152at 133.828 kb on + strandat 133.862 kb on + strandat 133.864 kb on + strandat 133.864 kb on + strandat 133.865 kb on - strandat 133.865 kb on - strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.867 kb on - strandat 133.891 kb on + strandat 133.927 kb on + strandat 133.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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131,027 - -0.1
131,059 - +0.1
131,459 - +0.0
131,533 + EX28DRAFT_4150 0.11 +0.3
131,533 + EX28DRAFT_4150 0.11 -0.6
131,647 + EX28DRAFT_4150 0.39 -0.7
131,801 + EX28DRAFT_4150 0.77 -0.3
131,904 - +1.4
132,182 - EX28DRAFT_4151 0.26 -0.1
132,364 - EX28DRAFT_4151 0.41 +0.0
132,364 - EX28DRAFT_4151 0.41 -0.1
132,364 - EX28DRAFT_4151 0.41 +0.4
132,780 + EX28DRAFT_4151 0.77 +0.0
132,842 + EX28DRAFT_4151 0.83 +0.8
132,842 + EX28DRAFT_4151 0.83 +0.1
133,005 - +0.4
133,015 - -0.1
133,015 - -0.7
133,018 - +0.5
133,111 + +0.4
133,112 - -0.4
133,117 - -1.0
133,117 - -0.1
133,117 - -0.2
133,117 - +1.9
133,117 - -1.2
133,117 - -0.3
133,145 - +0.3
133,151 + +1.3
133,151 + -0.4
133,152 - -0.6
133,152 - -1.5
133,152 - -0.1
133,159 + +0.1
133,181 - -1.8
133,237 + -0.9
133,238 - +1.9
133,244 + -1.4
133,244 + -1.9
133,315 + -2.5
133,318 + -2.9
133,349 - -1.5
133,488 + EX28DRAFT_4152 0.30 -2.1
133,634 + EX28DRAFT_4152 0.58 -2.1
133,828 + -0.6
133,862 + -1.4
133,864 + -2.1
133,864 + -1.1
133,865 - -1.6
133,865 - -2.6
133,866 + -1.4
133,866 + -2.0
133,866 + +0.5
133,867 - -0.1
133,891 + -3.3
133,927 + -0.6
133,943 - -0.9

Or see this region's nucleotide sequence