Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4029

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4028 and EX28DRAFT_4029 are separated by 12 nucleotidesEX28DRAFT_4029 and EX28DRAFT_4030 overlap by 35 nucleotides EX28DRAFT_4028: EX28DRAFT_4028 - ribokinase, at 239,979 to 240,908 _4028 EX28DRAFT_4029: EX28DRAFT_4029 - transcriptional regulator, LacI family, at 240,921 to 241,904 _4029 EX28DRAFT_4030: EX28DRAFT_4030 - drug resistance transporter, EmrB/QacA subfamily, at 241,870 to 243,303 _4030 Position (kb) 240 241 242Strain fitness (log2 ratio) -1 0 1 2at 239.931 kb on + strandat 240.085 kb on - strand, within EX28DRAFT_4028at 240.197 kb on - strand, within EX28DRAFT_4028at 240.221 kb on + strand, within EX28DRAFT_4028at 240.221 kb on + strand, within EX28DRAFT_4028at 240.458 kb on + strand, within EX28DRAFT_4028at 240.474 kb on - strand, within EX28DRAFT_4028at 240.494 kb on - strand, within EX28DRAFT_4028at 240.494 kb on - strand, within EX28DRAFT_4028at 240.620 kb on + strand, within EX28DRAFT_4028at 240.726 kb on - strand, within EX28DRAFT_4028at 240.744 kb on - strand, within EX28DRAFT_4028at 240.800 kb on + strand, within EX28DRAFT_4028at 240.880 kb on + strandat 241.044 kb on + strand, within EX28DRAFT_4029at 241.074 kb on - strand, within EX28DRAFT_4029at 241.100 kb on + strand, within EX28DRAFT_4029at 241.132 kb on - strand, within EX28DRAFT_4029at 241.196 kb on + strand, within EX28DRAFT_4029at 241.196 kb on + strand, within EX28DRAFT_4029at 241.388 kb on + strand, within EX28DRAFT_4029at 241.507 kb on - strand, within EX28DRAFT_4029at 241.683 kb on + strand, within EX28DRAFT_4029at 241.684 kb on - strand, within EX28DRAFT_4029at 241.738 kb on + strand, within EX28DRAFT_4029at 241.753 kb on - strand, within EX28DRAFT_4029at 241.833 kb on - strandat 241.872 kb on - strandat 241.903 kb on - strandat 241.954 kb on + strandat 241.963 kb on - strandat 241.963 kb on - strandat 241.986 kb on + strandat 241.986 kb on + strandat 241.986 kb on + strandat 242.005 kb on - strandat 242.010 kb on + strandat 242.010 kb on + strandat 242.010 kb on + strandat 242.011 kb on - strandat 242.011 kb on - strandat 242.013 kb on - strandat 242.013 kb on - strandat 242.013 kb on - strandat 242.031 kb on + strand, within EX28DRAFT_4030at 242.032 kb on - strand, within EX28DRAFT_4030at 242.089 kb on + strand, within EX28DRAFT_4030at 242.356 kb on - strand, within EX28DRAFT_4030at 242.575 kb on + strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.577 kb on + strand, within EX28DRAFT_4030at 242.578 kb on - strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.580 kb on - strand, within EX28DRAFT_4030at 242.591 kb on - strand, within EX28DRAFT_4030at 242.748 kb on + strand, within EX28DRAFT_4030at 242.749 kb on - strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.762 kb on + strand, within EX28DRAFT_4030at 242.763 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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239,931 + -1.2
240,085 - EX28DRAFT_4028 0.11 +0.1
240,197 - EX28DRAFT_4028 0.23 +1.0
240,221 + EX28DRAFT_4028 0.26 -1.2
240,221 + EX28DRAFT_4028 0.26 +1.3
240,458 + EX28DRAFT_4028 0.52 +2.0
240,474 - EX28DRAFT_4028 0.53 +1.1
240,494 - EX28DRAFT_4028 0.55 +0.1
240,494 - EX28DRAFT_4028 0.55 -0.3
240,620 + EX28DRAFT_4028 0.69 -0.3
240,726 - EX28DRAFT_4028 0.80 +0.0
240,744 - EX28DRAFT_4028 0.82 -1.5
240,800 + EX28DRAFT_4028 0.88 -0.1
240,880 + -0.4
241,044 + EX28DRAFT_4029 0.12 +1.0
241,074 - EX28DRAFT_4029 0.16 +1.0
241,100 + EX28DRAFT_4029 0.18 +0.4
241,132 - EX28DRAFT_4029 0.21 -0.3
241,196 + EX28DRAFT_4029 0.28 +0.2
241,196 + EX28DRAFT_4029 0.28 +0.0
241,388 + EX28DRAFT_4029 0.47 +1.7
241,507 - EX28DRAFT_4029 0.60 -0.9
241,683 + EX28DRAFT_4029 0.77 +0.0
241,684 - EX28DRAFT_4029 0.78 +0.7
241,738 + EX28DRAFT_4029 0.83 +0.2
241,753 - EX28DRAFT_4029 0.85 +0.5
241,833 - +0.4
241,872 - +0.9
241,903 - -0.6
241,954 + +0.3
241,963 - +0.2
241,963 - -0.5
241,986 + +0.5
241,986 + +0.1
241,986 + +1.0
242,005 - +0.1
242,010 + +0.2
242,010 + -0.4
242,010 + -0.8
242,011 - +0.5
242,011 - -0.1
242,013 - -0.4
242,013 - -0.5
242,013 - -0.9
242,031 + EX28DRAFT_4030 0.11 -1.1
242,032 - EX28DRAFT_4030 0.11 +0.4
242,089 + EX28DRAFT_4030 0.15 +0.2
242,356 - EX28DRAFT_4030 0.34 -0.1
242,575 + EX28DRAFT_4030 0.49 +1.0
242,576 - EX28DRAFT_4030 0.49 +1.0
242,576 - EX28DRAFT_4030 0.49 +0.7
242,576 - EX28DRAFT_4030 0.49 +0.6
242,577 + EX28DRAFT_4030 0.49 +0.1
242,578 - EX28DRAFT_4030 0.49 +0.1
242,579 + EX28DRAFT_4030 0.49 -0.2
242,579 + EX28DRAFT_4030 0.49 -0.0
242,580 - EX28DRAFT_4030 0.50 -0.2
242,591 - EX28DRAFT_4030 0.50 -0.4
242,748 + EX28DRAFT_4030 0.61 -0.2
242,749 - EX28DRAFT_4030 0.61 -0.1
242,750 + EX28DRAFT_4030 0.61 +0.3
242,750 + EX28DRAFT_4030 0.61 -0.2
242,750 + EX28DRAFT_4030 0.61 +0.2
242,751 - EX28DRAFT_4030 0.61 -0.4
242,751 - EX28DRAFT_4030 0.61 -0.4
242,751 - EX28DRAFT_4030 0.61 -0.2
242,762 + EX28DRAFT_4030 0.62 +1.3
242,763 - EX28DRAFT_4030 0.62 -0.4
242,794 - EX28DRAFT_4030 0.64 +1.2
242,794 - EX28DRAFT_4030 0.64 +0.8
242,794 - EX28DRAFT_4030 0.64 +1.2

Or see this region's nucleotide sequence