Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4026

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotidesEX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954 _4026 EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872 _4027 Position (kb) 237 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 237.064 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.135 kb on + strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.550 kb on + strand, within EX28DRAFT_4025at 237.582 kb on + strand, within EX28DRAFT_4025at 237.583 kb on - strand, within EX28DRAFT_4025at 237.781 kb on + strand, within EX28DRAFT_4025at 237.782 kb on - strand, within EX28DRAFT_4025at 237.784 kb on - strand, within EX28DRAFT_4025at 237.851 kb on + strandat 237.854 kb on + strandat 237.854 kb on + strandat 237.855 kb on - strandat 237.982 kb on + strandat 237.983 kb on - strandat 237.983 kb on - strandat 237.994 kb on + strandat 238.020 kb on - strandat 238.020 kb on - strandat 238.121 kb on - strand, within EX28DRAFT_4026at 238.121 kb on - strand, within EX28DRAFT_4026at 238.528 kb on + strand, within EX28DRAFT_4026at 238.529 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.580 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.586 kb on + strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.652 kb on - strand, within EX28DRAFT_4026at 238.658 kb on + strand, within EX28DRAFT_4026at 238.659 kb on - strand, within EX28DRAFT_4026at 238.745 kb on + strand, within EX28DRAFT_4026at 238.873 kb on - strandat 238.886 kb on + strandat 238.935 kb on + strandat 238.965 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 239.037 kb on + strandat 239.038 kb on - strandat 239.150 kb on + strand, within EX28DRAFT_4027at 239.214 kb on + strand, within EX28DRAFT_4027at 239.268 kb on + strand, within EX28DRAFT_4027at 239.269 kb on - strand, within EX28DRAFT_4027at 239.272 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.399 kb on + strand, within EX28DRAFT_4027at 239.554 kb on + strand, within EX28DRAFT_4027at 239.557 kb on + strand, within EX28DRAFT_4027at 239.557 kb on + strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.558 kb on - strand, within EX28DRAFT_4027at 239.671 kb on + strand, within EX28DRAFT_4027at 239.870 kb on + strandat 239.871 kb on - strandat 239.871 kb on - strandat 239.914 kb on + strandat 239.931 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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237,064 + EX28DRAFT_4025 0.39 -1.0
237,064 + EX28DRAFT_4025 0.39 -0.5
237,065 - EX28DRAFT_4025 0.39 +0.2
237,065 - EX28DRAFT_4025 0.39 -2.2
237,065 - EX28DRAFT_4025 0.39 +2.2
237,135 + EX28DRAFT_4025 0.44 +1.3
237,172 - EX28DRAFT_4025 0.46 -0.2
237,172 - EX28DRAFT_4025 0.46 +0.2
237,172 - EX28DRAFT_4025 0.46 -0.3
237,469 + EX28DRAFT_4025 0.66 -4.0
237,469 + EX28DRAFT_4025 0.66 -2.5
237,469 + EX28DRAFT_4025 0.66 -1.2
237,469 + EX28DRAFT_4025 0.66 -2.8
237,470 - EX28DRAFT_4025 0.66 +0.2
237,470 - EX28DRAFT_4025 0.66 -0.3
237,550 + EX28DRAFT_4025 0.71 -1.6
237,582 + EX28DRAFT_4025 0.73 -0.4
237,583 - EX28DRAFT_4025 0.73 +0.1
237,781 + EX28DRAFT_4025 0.86 -1.6
237,782 - EX28DRAFT_4025 0.87 -1.0
237,784 - EX28DRAFT_4025 0.87 +0.1
237,851 + -1.6
237,854 + -1.9
237,854 + -0.3
237,855 - -0.3
237,982 + -1.1
237,983 - +1.7
237,983 - -0.2
237,994 + -0.0
238,020 - -0.1
238,020 - +0.2
238,121 - EX28DRAFT_4026 0.14 +0.0
238,121 - EX28DRAFT_4026 0.14 +0.7
238,528 + EX28DRAFT_4026 0.56 -1.3
238,529 - EX28DRAFT_4026 0.56 +0.4
238,551 - EX28DRAFT_4026 0.58 +0.2
238,551 - EX28DRAFT_4026 0.58 -0.0
238,551 - EX28DRAFT_4026 0.58 +1.1
238,551 - EX28DRAFT_4026 0.58 -0.1
238,580 + EX28DRAFT_4026 0.61 -1.6
238,582 + EX28DRAFT_4026 0.61 -1.9
238,582 + EX28DRAFT_4026 0.61 -0.3
238,582 + EX28DRAFT_4026 0.61 -1.6
238,582 + EX28DRAFT_4026 0.61 -1.8
238,583 - EX28DRAFT_4026 0.61 +0.6
238,583 - EX28DRAFT_4026 0.61 +0.8
238,583 - EX28DRAFT_4026 0.61 +0.0
238,583 - EX28DRAFT_4026 0.61 +0.2
238,583 - EX28DRAFT_4026 0.61 +0.3
238,586 + EX28DRAFT_4026 0.62 -0.9
238,587 - EX28DRAFT_4026 0.62 +0.4
238,587 - EX28DRAFT_4026 0.62 -0.7
238,587 - EX28DRAFT_4026 0.62 -0.1
238,640 - EX28DRAFT_4026 0.67 -0.7
238,640 - EX28DRAFT_4026 0.67 -0.2
238,640 - EX28DRAFT_4026 0.67 +0.3
238,652 - EX28DRAFT_4026 0.69 +0.1
238,658 + EX28DRAFT_4026 0.69 +1.1
238,659 - EX28DRAFT_4026 0.69 +0.7
238,745 + EX28DRAFT_4026 0.78 -1.6
238,873 - +0.6
238,886 + -1.0
238,935 + -1.5
238,965 + -1.6
238,977 + -1.2
238,977 + -1.2
238,977 + -1.4
238,977 + -1.0
238,977 + -1.0
238,977 + -1.0
238,977 + -0.6
238,978 - +0.5
238,978 - +0.2
238,978 - +0.5
238,978 - +0.1
239,037 + -2.4
239,038 - +0.5
239,150 + EX28DRAFT_4027 0.19 -1.0
239,214 + EX28DRAFT_4027 0.26 -0.0
239,268 + EX28DRAFT_4027 0.32 -1.3
239,269 - EX28DRAFT_4027 0.32 -0.2
239,272 + EX28DRAFT_4027 0.33 -0.9
239,399 + EX28DRAFT_4027 0.47 -1.4
239,399 + EX28DRAFT_4027 0.47 -1.3
239,399 + EX28DRAFT_4027 0.47 -1.9
239,554 + EX28DRAFT_4027 0.64 -0.8
239,557 + EX28DRAFT_4027 0.65 -1.7
239,557 + EX28DRAFT_4027 0.65 -1.7
239,558 - EX28DRAFT_4027 0.65 +0.7
239,558 - EX28DRAFT_4027 0.65 +0.5
239,558 - EX28DRAFT_4027 0.65 +0.5
239,558 - EX28DRAFT_4027 0.65 +0.3
239,671 + EX28DRAFT_4027 0.77 -1.4
239,870 + -1.5
239,871 - +0.2
239,871 - +0.6
239,914 + -1.1
239,931 + -1.2

Or see this region's nucleotide sequence