Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3995

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3994 and EX28DRAFT_3995 overlap by 32 nucleotidesEX28DRAFT_3995 and EX28DRAFT_3996 are separated by 122 nucleotidesEX28DRAFT_3996 and EX28DRAFT_3997 are separated by 36 nucleotides EX28DRAFT_3994: EX28DRAFT_3994 - Arabinose efflux permease, at 203,832 to 205,007 _3994 EX28DRAFT_3995: EX28DRAFT_3995 - Transcriptional regulator, at 204,976 to 205,947 _3995 EX28DRAFT_3996: EX28DRAFT_3996 - Phosphopantetheinyl transferase, at 206,070 to 206,816 _3996 EX28DRAFT_3997: EX28DRAFT_3997 - Predicted flavoprotein, at 206,853 to 207,419 _3997 Position (kb) 204 205 206Strain fitness (log2 ratio) -1 0 1at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.345 kb on - strand, within EX28DRAFT_3994at 204.401 kb on + strand, within EX28DRAFT_3994at 204.473 kb on - strand, within EX28DRAFT_3994at 204.495 kb on + strand, within EX28DRAFT_3994at 204.495 kb on + strand, within EX28DRAFT_3994at 204.499 kb on + strand, within EX28DRAFT_3994at 204.552 kb on + strand, within EX28DRAFT_3994at 204.552 kb on + strand, within EX28DRAFT_3994at 204.553 kb on - strand, within EX28DRAFT_3994at 204.571 kb on + strand, within EX28DRAFT_3994at 204.620 kb on - strand, within EX28DRAFT_3994at 204.664 kb on + strand, within EX28DRAFT_3994at 204.664 kb on + strand, within EX28DRAFT_3994at 204.665 kb on - strand, within EX28DRAFT_3994at 204.728 kb on + strand, within EX28DRAFT_3994at 204.932 kb on - strandat 204.932 kb on - strandat 204.946 kb on + strandat 204.946 kb on + strandat 204.947 kb on - strandat 204.947 kb on - strandat 204.947 kb on - strandat 204.950 kb on + strandat 205.096 kb on - strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.470 kb on - strand, within EX28DRAFT_3995at 205.522 kb on + strand, within EX28DRAFT_3995at 205.640 kb on + strand, within EX28DRAFT_3995at 205.705 kb on - strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.762 kb on + strand, within EX28DRAFT_3995at 205.763 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.860 kb on + strandat 205.861 kb on - strandat 205.918 kb on + strandat 205.918 kb on + strandat 205.919 kb on - strandat 205.956 kb on - strandat 205.980 kb on + strandat 205.980 kb on + strandat 205.991 kb on - strandat 205.998 kb on - strandat 206.029 kb on + strandat 206.096 kb on - strandat 206.099 kb on + strandat 206.099 kb on + strandat 206.156 kb on + strand, within EX28DRAFT_3996at 206.157 kb on - strand, within EX28DRAFT_3996at 206.189 kb on - strand, within EX28DRAFT_3996at 206.320 kb on - strand, within EX28DRAFT_3996at 206.331 kb on - strand, within EX28DRAFT_3996at 206.331 kb on - strand, within EX28DRAFT_3996at 206.509 kb on + strand, within EX28DRAFT_3996at 206.614 kb on + strand, within EX28DRAFT_3996at 206.811 kb on - strandat 206.848 kb on + strandat 206.848 kb on + strandat 206.848 kb on + strandat 206.861 kb on + strandat 206.861 kb on + strandat 206.862 kb on - strandat 206.872 kb on + strandat 206.876 kb on + strandat 206.876 kb on + strandat 206.876 kb on + strandat 206.877 kb on - strandat 206.877 kb on - strandat 206.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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204,156 + EX28DRAFT_3994 0.28 +0.2
204,156 + EX28DRAFT_3994 0.28 +0.1
204,156 + EX28DRAFT_3994 0.28 -0.4
204,156 + EX28DRAFT_3994 0.28 -0.5
204,156 + EX28DRAFT_3994 0.28 +0.4
204,345 - EX28DRAFT_3994 0.44 -0.0
204,401 + EX28DRAFT_3994 0.48 -0.4
204,473 - EX28DRAFT_3994 0.55 +0.4
204,495 + EX28DRAFT_3994 0.56 +0.4
204,495 + EX28DRAFT_3994 0.56 -0.2
204,499 + EX28DRAFT_3994 0.57 +0.2
204,552 + EX28DRAFT_3994 0.61 +0.2
204,552 + EX28DRAFT_3994 0.61 -1.3
204,553 - EX28DRAFT_3994 0.61 -1.0
204,571 + EX28DRAFT_3994 0.63 -1.0
204,620 - EX28DRAFT_3994 0.67 -0.4
204,664 + EX28DRAFT_3994 0.71 +0.1
204,664 + EX28DRAFT_3994 0.71 -0.2
204,665 - EX28DRAFT_3994 0.71 -0.5
204,728 + EX28DRAFT_3994 0.76 -0.1
204,932 - +0.3
204,932 - +1.0
204,946 + -0.1
204,946 + -0.9
204,947 - -0.1
204,947 - +0.1
204,947 - +0.0
204,950 + +0.5
205,096 - EX28DRAFT_3995 0.12 +0.1
205,469 + EX28DRAFT_3995 0.51 -0.3
205,469 + EX28DRAFT_3995 0.51 +0.1
205,470 - EX28DRAFT_3995 0.51 +0.3
205,522 + EX28DRAFT_3995 0.56 +0.1
205,640 + EX28DRAFT_3995 0.68 +0.4
205,705 - EX28DRAFT_3995 0.75 -0.2
205,729 + EX28DRAFT_3995 0.77 -0.4
205,729 + EX28DRAFT_3995 0.77 -0.6
205,729 + EX28DRAFT_3995 0.77 -0.4
205,730 - EX28DRAFT_3995 0.78 -0.3
205,730 - EX28DRAFT_3995 0.78 +0.0
205,730 - EX28DRAFT_3995 0.78 -0.2
205,730 - EX28DRAFT_3995 0.78 -0.7
205,762 + EX28DRAFT_3995 0.81 -1.4
205,763 - EX28DRAFT_3995 0.81 +0.1
205,834 - EX28DRAFT_3995 0.88 -1.0
205,834 - EX28DRAFT_3995 0.88 +0.1
205,860 + +0.1
205,861 - +0.3
205,918 + +0.2
205,918 + +0.0
205,919 - +0.3
205,956 - +0.3
205,980 + +0.3
205,980 + +0.3
205,991 - -1.4
205,998 - -0.2
206,029 + -0.5
206,096 - +0.1
206,099 + +0.2
206,099 + -0.2
206,156 + EX28DRAFT_3996 0.12 +0.4
206,157 - EX28DRAFT_3996 0.12 +0.4
206,189 - EX28DRAFT_3996 0.16 -0.6
206,320 - EX28DRAFT_3996 0.33 +1.4
206,331 - EX28DRAFT_3996 0.35 -0.2
206,331 - EX28DRAFT_3996 0.35 +0.7
206,509 + EX28DRAFT_3996 0.59 +0.1
206,614 + EX28DRAFT_3996 0.73 -0.0
206,811 - +0.2
206,848 + +0.1
206,848 + +1.0
206,848 + -0.0
206,861 + +0.2
206,861 + +0.6
206,862 - +0.7
206,872 + -0.0
206,876 + +0.2
206,876 + -0.2
206,876 + +0.5
206,877 - -0.1
206,877 - -0.2
206,877 - +0.4

Or see this region's nucleotide sequence