Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3917

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3916 and EX28DRAFT_3917 are separated by 53 nucleotidesEX28DRAFT_3917 and EX28DRAFT_3918 are separated by 53 nucleotidesEX28DRAFT_3918 and EX28DRAFT_3919 are separated by 23 nucleotides EX28DRAFT_3916: EX28DRAFT_3916 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 126,204 to 126,806 _3916 EX28DRAFT_3917: EX28DRAFT_3917 - P pilus assembly protein, pilin FimA, at 126,860 to 127,444 _3917 EX28DRAFT_3918: EX28DRAFT_3918 - P pilus assembly protein, chaperone PapD, at 127,498 to 128,175 _3918 EX28DRAFT_3919: EX28DRAFT_3919 - P pilus assembly protein, porin PapC, at 128,199 to 130,724 _3919 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1at 125.951 kb on - strandat 125.953 kb on + strandat 126.102 kb on + strandat 126.104 kb on + strandat 126.690 kb on + strand, within EX28DRAFT_3916at 126.690 kb on + strand, within EX28DRAFT_3916at 126.805 kb on - strandat 126.837 kb on - strandat 126.880 kb on + strandat 126.880 kb on + strandat 127.031 kb on - strand, within EX28DRAFT_3917at 127.213 kb on + strand, within EX28DRAFT_3917at 127.214 kb on - strand, within EX28DRAFT_3917at 127.214 kb on - strand, within EX28DRAFT_3917at 127.216 kb on + strand, within EX28DRAFT_3917at 127.217 kb on - strand, within EX28DRAFT_3917at 127.217 kb on - strand, within EX28DRAFT_3917at 127.277 kb on + strand, within EX28DRAFT_3917at 127.337 kb on - strand, within EX28DRAFT_3917at 127.371 kb on - strand, within EX28DRAFT_3917at 127.371 kb on - strand, within EX28DRAFT_3917at 127.424 kb on + strandat 127.425 kb on - strandat 127.436 kb on + strandat 127.437 kb on - strandat 127.443 kb on - strandat 127.478 kb on + strandat 127.497 kb on + strandat 127.498 kb on - strandat 127.498 kb on - strandat 127.536 kb on - strandat 127.724 kb on - strand, within EX28DRAFT_3918at 127.804 kb on + strand, within EX28DRAFT_3918at 127.897 kb on + strand, within EX28DRAFT_3918at 127.999 kb on + strand, within EX28DRAFT_3918at 128.000 kb on - strand, within EX28DRAFT_3918at 128.000 kb on - strand, within EX28DRAFT_3918at 128.364 kb on + strandat 128.364 kb on + strandat 128.379 kb on + strandat 128.379 kb on + strandat 128.379 kb on + strandat 128.380 kb on - strandat 128.380 kb on - strandat 128.380 kb on - strandat 128.381 kb on + strandat 128.382 kb on - strandat 128.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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125,951 - +0.0
125,953 + +0.1
126,102 + -1.6
126,104 + -0.2
126,690 + EX28DRAFT_3916 0.81 -0.0
126,690 + EX28DRAFT_3916 0.81 -0.0
126,805 - -0.2
126,837 - -1.0
126,880 + +0.1
126,880 + +0.1
127,031 - EX28DRAFT_3917 0.29 +0.2
127,213 + EX28DRAFT_3917 0.60 -0.0
127,214 - EX28DRAFT_3917 0.61 -0.6
127,214 - EX28DRAFT_3917 0.61 -0.7
127,216 + EX28DRAFT_3917 0.61 +0.1
127,217 - EX28DRAFT_3917 0.61 -0.3
127,217 - EX28DRAFT_3917 0.61 -0.4
127,277 + EX28DRAFT_3917 0.71 +0.2
127,337 - EX28DRAFT_3917 0.82 -1.2
127,371 - EX28DRAFT_3917 0.87 -0.2
127,371 - EX28DRAFT_3917 0.87 +0.7
127,424 + -0.3
127,425 - -0.6
127,436 + +0.1
127,437 - +0.3
127,443 - -0.4
127,478 + -0.1
127,497 + +0.3
127,498 - +0.3
127,498 - -0.1
127,536 - -0.9
127,724 - EX28DRAFT_3918 0.33 -0.3
127,804 + EX28DRAFT_3918 0.45 +0.5
127,897 + EX28DRAFT_3918 0.59 +0.4
127,999 + EX28DRAFT_3918 0.74 +0.0
128,000 - EX28DRAFT_3918 0.74 -0.6
128,000 - EX28DRAFT_3918 0.74 +0.5
128,364 + -0.9
128,364 + -0.0
128,379 + +0.2
128,379 + -0.2
128,379 + -0.5
128,380 - -0.8
128,380 - +1.5
128,380 - -0.2
128,381 + -0.1
128,382 - +0.1
128,395 - +0.5

Or see this region's nucleotide sequence