Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3916 and EX28DRAFT_3917 are separated by 53 nucleotides EX28DRAFT_3917 and EX28DRAFT_3918 are separated by 53 nucleotides EX28DRAFT_3918 and EX28DRAFT_3919 are separated by 23 nucleotides
EX28DRAFT_3916: EX28DRAFT_3916 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 126,204 to 126,806
_3916
EX28DRAFT_3917: EX28DRAFT_3917 - P pilus assembly protein, pilin FimA, at 126,860 to 127,444
_3917
EX28DRAFT_3918: EX28DRAFT_3918 - P pilus assembly protein, chaperone PapD, at 127,498 to 128,175
_3918
EX28DRAFT_3919: EX28DRAFT_3919 - P pilus assembly protein, porin PapC, at 128,199 to 130,724
_3919
Position (kb)
126
127
128 Strain fitness (log2 ratio)
-1
0
1 at 125.951 kb on - strand at 125.953 kb on + strand at 126.102 kb on + strand at 126.104 kb on + strand at 126.690 kb on + strand, within EX28DRAFT_3916 at 126.690 kb on + strand, within EX28DRAFT_3916 at 126.805 kb on - strand at 126.837 kb on - strand at 126.880 kb on + strand at 126.880 kb on + strand at 127.031 kb on - strand, within EX28DRAFT_3917 at 127.213 kb on + strand, within EX28DRAFT_3917 at 127.214 kb on - strand, within EX28DRAFT_3917 at 127.214 kb on - strand, within EX28DRAFT_3917 at 127.216 kb on + strand, within EX28DRAFT_3917 at 127.217 kb on - strand, within EX28DRAFT_3917 at 127.217 kb on - strand, within EX28DRAFT_3917 at 127.277 kb on + strand, within EX28DRAFT_3917 at 127.337 kb on - strand, within EX28DRAFT_3917 at 127.371 kb on - strand, within EX28DRAFT_3917 at 127.371 kb on - strand, within EX28DRAFT_3917 at 127.424 kb on + strand at 127.425 kb on - strand at 127.436 kb on + strand at 127.437 kb on - strand at 127.443 kb on - strand at 127.478 kb on + strand at 127.497 kb on + strand at 127.498 kb on - strand at 127.498 kb on - strand at 127.536 kb on - strand at 127.724 kb on - strand, within EX28DRAFT_3918 at 127.804 kb on + strand, within EX28DRAFT_3918 at 127.897 kb on + strand, within EX28DRAFT_3918 at 127.999 kb on + strand, within EX28DRAFT_3918 at 128.000 kb on - strand, within EX28DRAFT_3918 at 128.000 kb on - strand, within EX28DRAFT_3918 at 128.364 kb on + strand at 128.364 kb on + strand at 128.379 kb on + strand at 128.379 kb on + strand at 128.379 kb on + strand at 128.380 kb on - strand at 128.380 kb on - strand at 128.380 kb on - strand at 128.381 kb on + strand at 128.382 kb on - strand at 128.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 125,951 - +0.0 125,953 + +0.1 126,102 + -1.6 126,104 + -0.2 126,690 + EX28DRAFT_3916 0.81 -0.0 126,690 + EX28DRAFT_3916 0.81 -0.0 126,805 - -0.2 126,837 - -1.0 126,880 + +0.1 126,880 + +0.1 127,031 - EX28DRAFT_3917 0.29 +0.2 127,213 + EX28DRAFT_3917 0.60 -0.0 127,214 - EX28DRAFT_3917 0.61 -0.6 127,214 - EX28DRAFT_3917 0.61 -0.7 127,216 + EX28DRAFT_3917 0.61 +0.1 127,217 - EX28DRAFT_3917 0.61 -0.3 127,217 - EX28DRAFT_3917 0.61 -0.4 127,277 + EX28DRAFT_3917 0.71 +0.2 127,337 - EX28DRAFT_3917 0.82 -1.2 127,371 - EX28DRAFT_3917 0.87 -0.2 127,371 - EX28DRAFT_3917 0.87 +0.7 127,424 + -0.3 127,425 - -0.6 127,436 + +0.1 127,437 - +0.3 127,443 - -0.4 127,478 + -0.1 127,497 + +0.3 127,498 - +0.3 127,498 - -0.1 127,536 - -0.9 127,724 - EX28DRAFT_3918 0.33 -0.3 127,804 + EX28DRAFT_3918 0.45 +0.5 127,897 + EX28DRAFT_3918 0.59 +0.4 127,999 + EX28DRAFT_3918 0.74 +0.0 128,000 - EX28DRAFT_3918 0.74 -0.6 128,000 - EX28DRAFT_3918 0.74 +0.5 128,364 + -0.9 128,364 + -0.0 128,379 + +0.2 128,379 + -0.2 128,379 + -0.5 128,380 - -0.8 128,380 - +1.5 128,380 - -0.2 128,381 + -0.1 128,382 - +0.1 128,395 - +0.5
Or see this region's nucleotide sequence