Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3878

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3877 and EX28DRAFT_3878 are separated by 96 nucleotidesEX28DRAFT_3878 and EX28DRAFT_3879 overlap by 4 nucleotides EX28DRAFT_3877: EX28DRAFT_3877 - hypothetical protein, at 87,207 to 88,217 _3877 EX28DRAFT_3878: EX28DRAFT_3878 - lipopolysaccharide heptosyltransferase III, putative, at 88,314 to 89,384 _3878 EX28DRAFT_3879: EX28DRAFT_3879 - Glycosyltransferase, at 89,381 to 90,508 _3879 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.330 kb on - strand, within EX28DRAFT_3877at 87.368 kb on + strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.379 kb on + strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.476 kb on - strand, within EX28DRAFT_3877at 87.480 kb on - strand, within EX28DRAFT_3877at 87.533 kb on + strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.536 kb on - strand, within EX28DRAFT_3877at 87.631 kb on + strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.914 kb on + strand, within EX28DRAFT_3877at 88.010 kb on - strand, within EX28DRAFT_3877at 88.032 kb on - strand, within EX28DRAFT_3877at 88.091 kb on + strand, within EX28DRAFT_3877at 88.131 kb on - strandat 88.145 kb on + strandat 88.194 kb on + strandat 88.194 kb on + strandat 88.195 kb on - strandat 88.241 kb on - strandat 88.300 kb on - strandat 88.310 kb on + strandat 88.357 kb on + strandat 88.523 kb on + strand, within EX28DRAFT_3878at 88.523 kb on + strand, within EX28DRAFT_3878at 88.700 kb on + strand, within EX28DRAFT_3878at 88.701 kb on - strand, within EX28DRAFT_3878at 88.798 kb on + strand, within EX28DRAFT_3878at 88.834 kb on - strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.931 kb on + strand, within EX28DRAFT_3878at 88.991 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.168 kb on + strand, within EX28DRAFT_3878at 89.373 kb on + strandat 89.373 kb on + strandat 89.373 kb on + strandat 89.374 kb on - strandat 89.675 kb on + strand, within EX28DRAFT_3879at 89.676 kb on - strand, within EX28DRAFT_3879at 89.760 kb on - strand, within EX28DRAFT_3879at 89.805 kb on - strand, within EX28DRAFT_3879at 90.230 kb on + strand, within EX28DRAFT_3879at 90.231 kb on - strand, within EX28DRAFT_3879

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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87,330 - EX28DRAFT_3877 0.12 +0.7
87,368 + EX28DRAFT_3877 0.16 +0.2
87,369 - EX28DRAFT_3877 0.16 +0.4
87,369 - EX28DRAFT_3877 0.16 +0.6
87,379 + EX28DRAFT_3877 0.17 -0.0
87,380 - EX28DRAFT_3877 0.17 +0.5
87,380 - EX28DRAFT_3877 0.17 -0.2
87,380 - EX28DRAFT_3877 0.17 +0.6
87,380 - EX28DRAFT_3877 0.17 -0.6
87,475 + EX28DRAFT_3877 0.27 -0.7
87,475 + EX28DRAFT_3877 0.27 +0.3
87,476 - EX28DRAFT_3877 0.27 +0.5
87,480 - EX28DRAFT_3877 0.27 +0.0
87,533 + EX28DRAFT_3877 0.32 -0.2
87,534 - EX28DRAFT_3877 0.32 +0.7
87,534 - EX28DRAFT_3877 0.32 +3.0
87,534 - EX28DRAFT_3877 0.32 +0.1
87,534 - EX28DRAFT_3877 0.32 +0.1
87,536 - EX28DRAFT_3877 0.33 +0.3
87,631 + EX28DRAFT_3877 0.42 +0.1
87,866 - EX28DRAFT_3877 0.65 +1.1
87,866 - EX28DRAFT_3877 0.65 +0.2
87,866 - EX28DRAFT_3877 0.65 -0.9
87,866 - EX28DRAFT_3877 0.65 +0.3
87,914 + EX28DRAFT_3877 0.70 +0.7
88,010 - EX28DRAFT_3877 0.79 +0.0
88,032 - EX28DRAFT_3877 0.82 +0.3
88,091 + EX28DRAFT_3877 0.87 -0.6
88,131 - +0.9
88,145 + +1.2
88,194 + +0.3
88,194 + -0.5
88,195 - +0.7
88,241 - +0.8
88,300 - -0.2
88,310 + -0.3
88,357 + -0.4
88,523 + EX28DRAFT_3878 0.20 -0.3
88,523 + EX28DRAFT_3878 0.20 -0.9
88,700 + EX28DRAFT_3878 0.36 -1.4
88,701 - EX28DRAFT_3878 0.36 -1.4
88,798 + EX28DRAFT_3878 0.45 -0.3
88,834 - EX28DRAFT_3878 0.49 -1.2
88,896 + EX28DRAFT_3878 0.54 -0.0
88,896 + EX28DRAFT_3878 0.54 -0.4
88,897 - EX28DRAFT_3878 0.54 -2.1
88,897 - EX28DRAFT_3878 0.54 -1.7
88,931 + EX28DRAFT_3878 0.58 -0.5
88,991 + EX28DRAFT_3878 0.63 -0.2
89,095 + EX28DRAFT_3878 0.73 -0.4
89,095 + EX28DRAFT_3878 0.73 -0.3
89,168 + EX28DRAFT_3878 0.80 -0.2
89,373 + -0.5
89,373 + +0.9
89,373 + -0.4
89,374 - -0.0
89,675 + EX28DRAFT_3879 0.26 -3.2
89,676 - EX28DRAFT_3879 0.26 -1.8
89,760 - EX28DRAFT_3879 0.34 -0.8
89,805 - EX28DRAFT_3879 0.38 -2.0
90,230 + EX28DRAFT_3879 0.75 -2.2
90,231 - EX28DRAFT_3879 0.75 +0.1

Or see this region's nucleotide sequence