Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3869

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3867 and EX28DRAFT_3868 are separated by 15 nucleotidesEX28DRAFT_3868 and EX28DRAFT_3869 are separated by 27 nucleotidesEX28DRAFT_3869 and EX28DRAFT_3870 are separated by 9 nucleotides EX28DRAFT_3867: EX28DRAFT_3867 - Glycosyl transferases group 1, at 76,372 to 77,577 _3867 EX28DRAFT_3868: EX28DRAFT_3868 - hypothetical protein, at 77,593 to 78,507 _3868 EX28DRAFT_3869: EX28DRAFT_3869 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 78,535 to 79,563 _3869 EX28DRAFT_3870: EX28DRAFT_3870 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29), at 79,573 to 80,769 _3870 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3at 77.539 kb on + strandat 77.539 kb on + strandat 77.540 kb on - strandat 77.588 kb on + strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.599 kb on - strandat 77.625 kb on + strandat 77.626 kb on - strandat 77.695 kb on - strand, within EX28DRAFT_3868at 77.738 kb on + strand, within EX28DRAFT_3868at 77.765 kb on - strand, within EX28DRAFT_3868at 77.881 kb on + strand, within EX28DRAFT_3868at 77.888 kb on - strand, within EX28DRAFT_3868at 77.889 kb on + strand, within EX28DRAFT_3868at 77.890 kb on - strand, within EX28DRAFT_3868at 77.899 kb on + strand, within EX28DRAFT_3868at 77.900 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 78.022 kb on + strand, within EX28DRAFT_3868at 78.023 kb on - strand, within EX28DRAFT_3868at 78.094 kb on + strand, within EX28DRAFT_3868at 78.252 kb on - strand, within EX28DRAFT_3868at 78.285 kb on - strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.457 kb on + strandat 78.458 kb on - strandat 78.540 kb on + strandat 78.627 kb on + strandat 78.628 kb on - strandat 78.630 kb on + strandat 78.630 kb on + strandat 78.678 kb on - strand, within EX28DRAFT_3869at 78.704 kb on + strand, within EX28DRAFT_3869at 78.704 kb on + strand, within EX28DRAFT_3869at 78.705 kb on - strand, within EX28DRAFT_3869at 78.705 kb on - strand, within EX28DRAFT_3869at 79.149 kb on + strand, within EX28DRAFT_3869at 79.150 kb on - strand, within EX28DRAFT_3869at 79.194 kb on - strand, within EX28DRAFT_3869at 79.236 kb on + strand, within EX28DRAFT_3869at 79.236 kb on + strand, within EX28DRAFT_3869at 79.237 kb on - strand, within EX28DRAFT_3869at 79.254 kb on + strand, within EX28DRAFT_3869at 79.255 kb on - strand, within EX28DRAFT_3869at 79.255 kb on - strand, within EX28DRAFT_3869at 79.294 kb on - strand, within EX28DRAFT_3869at 79.370 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.431 kb on - strand, within EX28DRAFT_3869at 79.582 kb on + strandat 79.719 kb on - strand, within EX28DRAFT_3870at 79.907 kb on - strand, within EX28DRAFT_3870at 80.162 kb on + strand, within EX28DRAFT_3870at 80.163 kb on - strand, within EX28DRAFT_3870at 80.331 kb on + strand, within EX28DRAFT_3870at 80.341 kb on + strand, within EX28DRAFT_3870

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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77,539 + +0.1
77,539 + +0.5
77,540 - +1.5
77,588 + +0.0
77,589 - +0.1
77,589 - -0.3
77,589 - -0.1
77,589 - +0.0
77,592 + +0.6
77,592 + -0.1
77,592 + +0.4
77,592 + -0.2
77,592 + -0.3
77,592 + -0.6
77,593 - -0.1
77,593 - -0.4
77,593 - -0.3
77,593 - +0.2
77,599 - -0.0
77,625 + -0.3
77,626 - -0.2
77,695 - EX28DRAFT_3868 0.11 -0.0
77,738 + EX28DRAFT_3868 0.16 +3.0
77,765 - EX28DRAFT_3868 0.19 +0.2
77,881 + EX28DRAFT_3868 0.31 -0.1
77,888 - EX28DRAFT_3868 0.32 +1.9
77,889 + EX28DRAFT_3868 0.32 +0.3
77,890 - EX28DRAFT_3868 0.32 -1.6
77,899 + EX28DRAFT_3868 0.33 +0.6
77,900 - EX28DRAFT_3868 0.34 +0.3
77,955 - EX28DRAFT_3868 0.40 -0.2
77,955 - EX28DRAFT_3868 0.40 -0.1
78,022 + EX28DRAFT_3868 0.47 -0.5
78,023 - EX28DRAFT_3868 0.47 +0.3
78,094 + EX28DRAFT_3868 0.55 -0.5
78,252 - EX28DRAFT_3868 0.72 +0.1
78,285 - EX28DRAFT_3868 0.76 +0.0
78,412 + EX28DRAFT_3868 0.90 -0.4
78,412 + EX28DRAFT_3868 0.90 +0.4
78,412 + EX28DRAFT_3868 0.90 +0.1
78,457 + -0.1
78,458 - -0.4
78,540 + +0.4
78,627 + +0.0
78,628 - +0.0
78,630 + -0.0
78,630 + +0.2
78,678 - EX28DRAFT_3869 0.14 +0.3
78,704 + EX28DRAFT_3869 0.16 +0.2
78,704 + EX28DRAFT_3869 0.16 +0.5
78,705 - EX28DRAFT_3869 0.17 +1.5
78,705 - EX28DRAFT_3869 0.17 +0.3
79,149 + EX28DRAFT_3869 0.60 +0.6
79,150 - EX28DRAFT_3869 0.60 +0.1
79,194 - EX28DRAFT_3869 0.64 +0.3
79,236 + EX28DRAFT_3869 0.68 -1.4
79,236 + EX28DRAFT_3869 0.68 -0.3
79,237 - EX28DRAFT_3869 0.68 +0.4
79,254 + EX28DRAFT_3869 0.70 +0.4
79,255 - EX28DRAFT_3869 0.70 +0.5
79,255 - EX28DRAFT_3869 0.70 -0.8
79,294 - EX28DRAFT_3869 0.74 -1.0
79,370 + EX28DRAFT_3869 0.81 +0.1
79,430 + EX28DRAFT_3869 0.87 -0.2
79,430 + EX28DRAFT_3869 0.87 +0.1
79,430 + EX28DRAFT_3869 0.87 +0.1
79,431 - EX28DRAFT_3869 0.87 +1.4
79,582 + +0.3
79,719 - EX28DRAFT_3870 0.12 -0.2
79,907 - EX28DRAFT_3870 0.28 +0.1
80,162 + EX28DRAFT_3870 0.49 +0.1
80,163 - EX28DRAFT_3870 0.49 +0.2
80,331 + EX28DRAFT_3870 0.63 -2.1
80,341 + EX28DRAFT_3870 0.64 +1.5

Or see this region's nucleotide sequence