Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3700 and EX28DRAFT_3701 are separated by 10 nucleotides EX28DRAFT_3701 and EX28DRAFT_3702 are separated by 174 nucleotides
EX28DRAFT_3700: EX28DRAFT_3700 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 370,509 to 371,891
_3700
EX28DRAFT_3701: EX28DRAFT_3701 - prepilin-type N-terminal cleavage/methylation domain, at 371,902 to 372,339
_3701
EX28DRAFT_3702: EX28DRAFT_3702 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 372,514 to 373,407
_3702
Position (kb) 371
372
373 Strain fitness (log2 ratio) -1
0
1 at 371.082 kb on + strand, within EX28DRAFT_3700 at 371.099 kb on + strand, within EX28DRAFT_3700 at 371.153 kb on + strand, within EX28DRAFT_3700 at 371.197 kb on + strand, within EX28DRAFT_3700 at 371.197 kb on + strand, within EX28DRAFT_3700 at 371.198 kb on - strand, within EX28DRAFT_3700 at 371.301 kb on - strand, within EX28DRAFT_3700 at 371.485 kb on - strand, within EX28DRAFT_3700 at 371.635 kb on + strand, within EX28DRAFT_3700 at 371.645 kb on + strand, within EX28DRAFT_3700 at 371.698 kb on - strand, within EX28DRAFT_3700 at 371.965 kb on - strand, within EX28DRAFT_3701 at 372.124 kb on - strand, within EX28DRAFT_3701 at 372.217 kb on - strand, within EX28DRAFT_3701 at 372.339 kb on + strand at 372.340 kb on - strand at 372.340 kb on - strand at 372.350 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.579 kb on - strand at 372.579 kb on - strand at 372.579 kb on - strand at 372.766 kb on + strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 371,082 + EX28DRAFT_3700 0.41 +0.1 371,099 + EX28DRAFT_3700 0.43 +1.0 371,153 + EX28DRAFT_3700 0.47 -0.1 371,197 + EX28DRAFT_3700 0.50 +0.5 371,197 + EX28DRAFT_3700 0.50 +0.5 371,198 - EX28DRAFT_3700 0.50 -0.1 371,301 - EX28DRAFT_3700 0.57 +0.8 371,485 - EX28DRAFT_3700 0.71 +0.2 371,635 + EX28DRAFT_3700 0.81 +0.5 371,645 + EX28DRAFT_3700 0.82 -0.1 371,698 - EX28DRAFT_3700 0.86 -0.2 371,965 - EX28DRAFT_3701 0.14 +0.8 372,124 - EX28DRAFT_3701 0.51 +0.4 372,217 - EX28DRAFT_3701 0.72 +0.0 372,339 + -0.4 372,340 - +0.0 372,340 - -0.1 372,350 + +0.2 372,578 + +0.8 372,578 + -0.3 372,578 + -1.1 372,578 + +0.3 372,579 - -0.4 372,579 - +0.0 372,579 - +1.2 372,766 + EX28DRAFT_3702 0.28 +1.0 372,838 - EX28DRAFT_3702 0.36 +0.4 372,838 - EX28DRAFT_3702 0.36 +0.2 372,838 - EX28DRAFT_3702 0.36 -0.4 372,915 - EX28DRAFT_3702 0.45 -0.5 372,915 - EX28DRAFT_3702 0.45 -0.9 372,915 - EX28DRAFT_3702 0.45 +1.1
Or see this region's nucleotide sequence