Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3669 and EX28DRAFT_3670 overlap by 1 nucleotides EX28DRAFT_3670 and EX28DRAFT_3671 are separated by 43 nucleotides EX28DRAFT_3671 and EX28DRAFT_3672 are separated by 574 nucleotides
EX28DRAFT_3669: EX28DRAFT_3669 - 3-isopropylmalate dehydrogenase, at 335,795 to 336,886
_3669
EX28DRAFT_3670: EX28DRAFT_3670 - 2-isopropylmalate synthase (EC 2.3.3.13), at 336,886 to 338,457
_3670
EX28DRAFT_3671: EX28DRAFT_3671 - RNA, at 338,501 to 338,649
_3671
EX28DRAFT_3672: EX28DRAFT_3672 - Transcriptional regulator, at 339,224 to 340,186
_3672
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.214 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.760 kb on - strand, within EX28DRAFT_3669 at 336.869 kb on - strand at 336.874 kb on - strand at 337.112 kb on + strand, within EX28DRAFT_3670 at 337.160 kb on + strand, within EX28DRAFT_3670 at 337.161 kb on - strand, within EX28DRAFT_3670 at 337.161 kb on - strand, within EX28DRAFT_3670 at 337.274 kb on + strand, within EX28DRAFT_3670 at 337.315 kb on - strand, within EX28DRAFT_3670 at 337.419 kb on + strand, within EX28DRAFT_3670 at 337.419 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.438 kb on - strand, within EX28DRAFT_3670 at 337.486 kb on + strand, within EX28DRAFT_3670 at 337.486 kb on + strand, within EX28DRAFT_3670 at 337.695 kb on + strand, within EX28DRAFT_3670 at 337.762 kb on + strand, within EX28DRAFT_3670 at 337.765 kb on - strand, within EX28DRAFT_3670 at 337.821 kb on + strand, within EX28DRAFT_3670 at 337.864 kb on - strand, within EX28DRAFT_3670 at 337.937 kb on + strand, within EX28DRAFT_3670 at 338.064 kb on - strand, within EX28DRAFT_3670 at 338.087 kb on + strand, within EX28DRAFT_3670 at 338.087 kb on + strand, within EX28DRAFT_3670 at 338.087 kb on + strand, within EX28DRAFT_3670 at 338.346 kb on + strand at 338.427 kb on + strand at 338.427 kb on + strand at 338.427 kb on + strand at 338.428 kb on - strand at 338.463 kb on - strand at 338.500 kb on + strand at 338.501 kb on - strand at 338.537 kb on - strand, within EX28DRAFT_3671 at 338.600 kb on + strand, within EX28DRAFT_3671 at 338.603 kb on + strand, within EX28DRAFT_3671 at 338.604 kb on - strand, within EX28DRAFT_3671 at 338.604 kb on - strand, within EX28DRAFT_3671 at 338.604 kb on - strand, within EX28DRAFT_3671 at 338.604 kb on - strand, within EX28DRAFT_3671 at 338.659 kb on + strand at 338.668 kb on - strand at 338.755 kb on - strand at 338.832 kb on - strand at 338.904 kb on + strand at 338.926 kb on + strand at 339.037 kb on + strand at 339.083 kb on + strand at 339.194 kb on + strand at 339.259 kb on + strand at 339.298 kb on - strand at 339.355 kb on + strand, within EX28DRAFT_3672
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 336,213 + EX28DRAFT_3669 0.38 -0.8 336,213 + EX28DRAFT_3669 0.38 -1.6 336,213 + EX28DRAFT_3669 0.38 -3.1 336,213 + EX28DRAFT_3669 0.38 -3.1 336,213 + EX28DRAFT_3669 0.38 -3.2 336,214 - EX28DRAFT_3669 0.38 -2.3 336,323 - EX28DRAFT_3669 0.48 -2.3 336,323 - EX28DRAFT_3669 0.48 -3.7 336,388 - EX28DRAFT_3669 0.54 -4.1 336,388 - EX28DRAFT_3669 0.54 -1.3 336,388 - EX28DRAFT_3669 0.54 -4.0 336,760 - EX28DRAFT_3669 0.88 -1.7 336,869 - -3.1 336,874 - -3.0 337,112 + EX28DRAFT_3670 0.14 -2.9 337,160 + EX28DRAFT_3670 0.17 -2.3 337,161 - EX28DRAFT_3670 0.17 +0.5 337,161 - EX28DRAFT_3670 0.17 -1.5 337,274 + EX28DRAFT_3670 0.25 -1.0 337,315 - EX28DRAFT_3670 0.27 -1.4 337,419 + EX28DRAFT_3670 0.34 -4.1 337,419 + EX28DRAFT_3670 0.34 -5.2 337,421 + EX28DRAFT_3670 0.34 -3.7 337,421 + EX28DRAFT_3670 0.34 -1.5 337,421 + EX28DRAFT_3670 0.34 -4.0 337,421 + EX28DRAFT_3670 0.34 -3.3 337,438 - EX28DRAFT_3670 0.35 -3.1 337,486 + EX28DRAFT_3670 0.38 -2.7 337,486 + EX28DRAFT_3670 0.38 -5.4 337,695 + EX28DRAFT_3670 0.51 -2.9 337,762 + EX28DRAFT_3670 0.56 -3.5 337,765 - EX28DRAFT_3670 0.56 -4.3 337,821 + EX28DRAFT_3670 0.59 -1.6 337,864 - EX28DRAFT_3670 0.62 -2.6 337,937 + EX28DRAFT_3670 0.67 -4.3 338,064 - EX28DRAFT_3670 0.75 -3.4 338,087 + EX28DRAFT_3670 0.76 -2.2 338,087 + EX28DRAFT_3670 0.76 -0.9 338,087 + EX28DRAFT_3670 0.76 -0.4 338,346 + -4.3 338,427 + -1.3 338,427 + -0.1 338,427 + -1.5 338,428 - -3.3 338,463 - -2.6 338,500 + -2.1 338,501 - -0.6 338,537 - EX28DRAFT_3671 0.24 +0.0 338,600 + EX28DRAFT_3671 0.66 -2.6 338,603 + EX28DRAFT_3671 0.68 -4.2 338,604 - EX28DRAFT_3671 0.69 -3.9 338,604 - EX28DRAFT_3671 0.69 -1.9 338,604 - EX28DRAFT_3671 0.69 -0.4 338,604 - EX28DRAFT_3671 0.69 -2.6 338,659 + -3.7 338,668 - -0.4 338,755 - +0.0 338,832 - +0.5 338,904 + +0.1 338,926 + +1.0 339,037 + -0.2 339,083 + -0.7 339,194 + -0.3 339,259 + -0.0 339,298 - -0.7 339,355 + EX28DRAFT_3672 0.14 -0.2
Or see this region's nucleotide sequence