Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3602

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3601 and EX28DRAFT_3602 are separated by 227 nucleotidesEX28DRAFT_3602 and EX28DRAFT_3603 are separated by 55 nucleotidesEX28DRAFT_3603 and EX28DRAFT_3604 are separated by 27 nucleotidesEX28DRAFT_3604 and EX28DRAFT_3605 are separated by 50 nucleotides EX28DRAFT_3601: EX28DRAFT_3601 - ATP-binding cassette protein, ChvD family, at 259,378 to 261,045 _3601 EX28DRAFT_3602: EX28DRAFT_3602 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 261,273 to 263,210 _3602 EX28DRAFT_3603: EX28DRAFT_3603 - Trp operon repressor, at 263,266 to 263,595 _3603 EX28DRAFT_3604: EX28DRAFT_3604 - inosine/xanthosine triphosphatase, at 263,623 to 264,138 _3604 EX28DRAFT_3605: EX28DRAFT_3605 - Fructose-2,6-bisphosphatase, at 264,189 to 264,836 _3605 Position (kb) 261 262 263 264Strain fitness (log2 ratio) -2 -1 0 1 2at 260.315 kb on + strand, within EX28DRAFT_3601at 260.316 kb on - strand, within EX28DRAFT_3601at 260.335 kb on - strand, within EX28DRAFT_3601at 260.663 kb on + strand, within EX28DRAFT_3601at 260.664 kb on - strand, within EX28DRAFT_3601at 260.664 kb on - strand, within EX28DRAFT_3601at 260.723 kb on + strand, within EX28DRAFT_3601at 260.724 kb on - strand, within EX28DRAFT_3601at 260.724 kb on - strand, within EX28DRAFT_3601at 260.878 kb on - strand, within EX28DRAFT_3601at 260.878 kb on - strand, within EX28DRAFT_3601at 260.973 kb on + strandat 261.027 kb on + strandat 261.027 kb on + strandat 261.098 kb on + strandat 261.161 kb on + strandat 261.208 kb on + strandat 261.208 kb on + strandat 261.209 kb on - strandat 261.214 kb on - strandat 261.319 kb on + strandat 261.374 kb on + strandat 261.393 kb on - strandat 261.456 kb on + strandat 261.671 kb on + strand, within EX28DRAFT_3602at 261.671 kb on + strand, within EX28DRAFT_3602at 261.672 kb on - strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.675 kb on + strand, within EX28DRAFT_3602at 261.676 kb on - strand, within EX28DRAFT_3602at 261.676 kb on - strand, within EX28DRAFT_3602at 261.676 kb on - strand, within EX28DRAFT_3602at 261.676 kb on - strand, within EX28DRAFT_3602at 261.678 kb on + strand, within EX28DRAFT_3602at 261.679 kb on - strand, within EX28DRAFT_3602at 261.927 kb on - strand, within EX28DRAFT_3602at 261.927 kb on - strand, within EX28DRAFT_3602at 262.382 kb on + strand, within EX28DRAFT_3602at 262.443 kb on + strand, within EX28DRAFT_3602at 262.444 kb on - strand, within EX28DRAFT_3602at 262.456 kb on + strand, within EX28DRAFT_3602at 262.457 kb on - strand, within EX28DRAFT_3602at 262.457 kb on - strand, within EX28DRAFT_3602at 262.530 kb on + strand, within EX28DRAFT_3602at 262.539 kb on - strand, within EX28DRAFT_3602at 262.710 kb on + strand, within EX28DRAFT_3602at 262.734 kb on - strand, within EX28DRAFT_3602at 262.734 kb on - strand, within EX28DRAFT_3602at 262.761 kb on + strand, within EX28DRAFT_3602at 262.844 kb on + strand, within EX28DRAFT_3602at 262.880 kb on + strand, within EX28DRAFT_3602at 262.951 kb on - strand, within EX28DRAFT_3602at 262.983 kb on - strand, within EX28DRAFT_3602at 263.007 kb on + strand, within EX28DRAFT_3602at 263.113 kb on - strandat 263.142 kb on + strandat 263.142 kb on + strandat 263.146 kb on - strandat 263.146 kb on - strandat 263.227 kb on + strandat 263.262 kb on + strandat 263.263 kb on - strandat 263.263 kb on - strandat 263.284 kb on + strandat 263.577 kb on - strandat 263.577 kb on - strandat 263.617 kb on - strandat 263.678 kb on + strand, within EX28DRAFT_3604at 263.733 kb on + strand, within EX28DRAFT_3604at 263.759 kb on + strand, within EX28DRAFT_3604at 263.760 kb on - strand, within EX28DRAFT_3604at 264.111 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.139 kb on - strandat 264.143 kb on - strandat 264.172 kb on + strandat 264.173 kb on - strandat 264.173 kb on - strandat 264.173 kb on - strandat 264.174 kb on + strandat 264.174 kb on + strandat 264.201 kb on + strandat 264.201 kb on + strandat 264.202 kb on - strandat 264.202 kb on - strandat 264.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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260,315 + EX28DRAFT_3601 0.56 -0.8
260,316 - EX28DRAFT_3601 0.56 -0.6
260,335 - EX28DRAFT_3601 0.57 -0.6
260,663 + EX28DRAFT_3601 0.77 -0.1
260,664 - EX28DRAFT_3601 0.77 -0.2
260,664 - EX28DRAFT_3601 0.77 -0.3
260,723 + EX28DRAFT_3601 0.81 -0.1
260,724 - EX28DRAFT_3601 0.81 -0.3
260,724 - EX28DRAFT_3601 0.81 -0.1
260,878 - EX28DRAFT_3601 0.90 -0.8
260,878 - EX28DRAFT_3601 0.90 +0.2
260,973 + -0.4
261,027 + -0.0
261,027 + -0.2
261,098 + -0.5
261,161 + -0.3
261,208 + -0.0
261,208 + +0.8
261,209 - +0.0
261,214 - -0.3
261,319 + -2.5
261,374 + -0.8
261,393 - +0.1
261,456 + -0.5
261,671 + EX28DRAFT_3602 0.21 -0.3
261,671 + EX28DRAFT_3602 0.21 -0.0
261,672 - EX28DRAFT_3602 0.21 -0.1
261,675 + EX28DRAFT_3602 0.21 +0.2
261,675 + EX28DRAFT_3602 0.21 -0.6
261,675 + EX28DRAFT_3602 0.21 -0.0
261,675 + EX28DRAFT_3602 0.21 -0.2
261,675 + EX28DRAFT_3602 0.21 +0.9
261,675 + EX28DRAFT_3602 0.21 +0.2
261,676 - EX28DRAFT_3602 0.21 -0.1
261,676 - EX28DRAFT_3602 0.21 -0.1
261,676 - EX28DRAFT_3602 0.21 -0.2
261,676 - EX28DRAFT_3602 0.21 -1.0
261,678 + EX28DRAFT_3602 0.21 -0.2
261,679 - EX28DRAFT_3602 0.21 +0.7
261,927 - EX28DRAFT_3602 0.34 -0.1
261,927 - EX28DRAFT_3602 0.34 -0.1
262,382 + EX28DRAFT_3602 0.57 -0.2
262,443 + EX28DRAFT_3602 0.60 +0.2
262,444 - EX28DRAFT_3602 0.60 +0.4
262,456 + EX28DRAFT_3602 0.61 -0.6
262,457 - EX28DRAFT_3602 0.61 +0.6
262,457 - EX28DRAFT_3602 0.61 -0.0
262,530 + EX28DRAFT_3602 0.65 -1.3
262,539 - EX28DRAFT_3602 0.65 +1.5
262,710 + EX28DRAFT_3602 0.74 +0.0
262,734 - EX28DRAFT_3602 0.75 +0.3
262,734 - EX28DRAFT_3602 0.75 +0.6
262,761 + EX28DRAFT_3602 0.77 +0.1
262,844 + EX28DRAFT_3602 0.81 +0.2
262,880 + EX28DRAFT_3602 0.83 +0.6
262,951 - EX28DRAFT_3602 0.87 +0.0
262,983 - EX28DRAFT_3602 0.88 -0.4
263,007 + EX28DRAFT_3602 0.89 -0.4
263,113 - +0.3
263,142 + +0.1
263,142 + +0.7
263,146 - +0.2
263,146 - -0.1
263,227 + -0.3
263,262 + -1.1
263,263 - -0.4
263,263 - -0.0
263,284 + -1.1
263,577 - -0.4
263,577 - -0.5
263,617 - +0.2
263,678 + EX28DRAFT_3604 0.11 -0.1
263,733 + EX28DRAFT_3604 0.21 -0.6
263,759 + EX28DRAFT_3604 0.26 +1.6
263,760 - EX28DRAFT_3604 0.27 -0.7
264,111 + -0.2
264,138 + +2.6
264,138 + -0.1
264,138 + -0.4
264,138 + -0.4
264,139 - -1.4
264,143 - -0.5
264,172 + -0.5
264,173 - -1.0
264,173 - -0.3
264,173 - +0.3
264,174 + -0.2
264,174 + -0.4
264,201 + -0.7
264,201 + -1.2
264,202 - -0.2
264,202 - -0.6
264,202 - -1.0

Or see this region's nucleotide sequence