Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3369

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3368 and EX28DRAFT_3369 are separated by 85 nucleotidesEX28DRAFT_3369 and EX28DRAFT_3370 are separated by 74 nucleotides EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503 _3368 EX28DRAFT_3369: EX28DRAFT_3369 - RNA chaperone Hfq, at 37,589 to 37,900 _3369 EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255 _3370 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1at 37.322 kb on - strand, within EX28DRAFT_3368at 37.342 kb on + strand, within EX28DRAFT_3368at 37.509 kb on + strandat 37.509 kb on + strandat 37.509 kb on + strandat 37.522 kb on + strandat 37.555 kb on + strandat 37.831 kb on + strand, within EX28DRAFT_3369at 37.988 kb on - strandat 38.023 kb on + strandat 38.024 kb on - strandat 38.043 kb on + strandat 38.044 kb on - strandat 38.121 kb on + strand, within EX28DRAFT_3370at 38.122 kb on - strand, within EX28DRAFT_3370at 38.140 kb on + strand, within EX28DRAFT_3370at 38.157 kb on + strand, within EX28DRAFT_3370at 38.297 kb on + strand, within EX28DRAFT_3370at 38.298 kb on - strand, within EX28DRAFT_3370at 38.322 kb on + strand, within EX28DRAFT_3370at 38.689 kb on - strand, within EX28DRAFT_3370at 38.740 kb on - strand, within EX28DRAFT_3370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
37,322 - EX28DRAFT_3368 0.81 -1.2
37,342 + EX28DRAFT_3368 0.83 -2.7
37,509 + +1.0
37,509 + +0.1
37,509 + +1.2
37,522 + -0.4
37,555 + +0.2
37,831 + EX28DRAFT_3369 0.78 +1.0
37,988 - -0.1
38,023 + +0.2
38,024 - -0.3
38,043 + -0.6
38,044 - +0.1
38,121 + EX28DRAFT_3370 0.11 -0.4
38,122 - EX28DRAFT_3370 0.11 -0.3
38,140 + EX28DRAFT_3370 0.13 -0.3
38,157 + EX28DRAFT_3370 0.14 -0.1
38,297 + EX28DRAFT_3370 0.25 -0.2
38,298 - EX28DRAFT_3370 0.25 -0.4
38,322 + EX28DRAFT_3370 0.27 -0.7
38,689 - EX28DRAFT_3370 0.56 +0.5
38,740 - EX28DRAFT_3370 0.60 -0.2

Or see this region's nucleotide sequence