Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3275

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3274 and EX28DRAFT_3275 are separated by 646 nucleotidesEX28DRAFT_3275 and EX28DRAFT_3276 are separated by 9 nucleotides EX28DRAFT_3274: EX28DRAFT_3274 - radical SAM protein, TIGR01212 family, at 568,177 to 569,160 _3274 EX28DRAFT_3275: EX28DRAFT_3275 - Glutamate synthase domain 2, at 569,807 to 574,267 _3275 EX28DRAFT_3276: EX28DRAFT_3276 - glutamate synthase small subunit family protein, proteobacterial, at 574,277 to 575,695 _3276 Position (kb) 569 570 571 572 573 574 575Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 568.818 kb on - strand, within EX28DRAFT_3274at 568.822 kb on - strand, within EX28DRAFT_3274at 568.822 kb on - strand, within EX28DRAFT_3274at 568.822 kb on - strand, within EX28DRAFT_3274at 568.822 kb on - strand, within EX28DRAFT_3274at 568.859 kb on + strand, within EX28DRAFT_3274at 569.095 kb on - strandat 569.101 kb on + strandat 569.111 kb on - strandat 569.214 kb on + strandat 569.215 kb on - strandat 569.532 kb on + strandat 569.532 kb on + strandat 569.616 kb on + strandat 569.621 kb on - strandat 569.804 kb on + strandat 569.806 kb on + strandat 569.806 kb on + strandat 569.807 kb on - strandat 569.807 kb on - strandat 569.807 kb on - strandat 569.807 kb on - strandat 569.807 kb on - strandat 569.813 kb on + strandat 569.814 kb on - strandat 569.836 kb on + strandat 569.865 kb on + strandat 569.865 kb on + strandat 569.865 kb on + strandat 569.866 kb on - strandat 569.866 kb on - strandat 569.866 kb on - strandat 569.866 kb on - strandat 569.866 kb on - strandat 569.866 kb on - strandat 569.889 kb on + strandat 570.215 kb on - strandat 570.330 kb on - strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.362 kb on + strand, within EX28DRAFT_3275at 570.363 kb on - strand, within EX28DRAFT_3275at 570.363 kb on - strand, within EX28DRAFT_3275at 570.363 kb on - strand, within EX28DRAFT_3275at 570.363 kb on - strand, within EX28DRAFT_3275at 570.402 kb on - strand, within EX28DRAFT_3275at 570.569 kb on - strand, within EX28DRAFT_3275at 570.569 kb on - strand, within EX28DRAFT_3275at 570.572 kb on + strand, within EX28DRAFT_3275at 570.572 kb on + strand, within EX28DRAFT_3275at 570.572 kb on + strand, within EX28DRAFT_3275at 570.572 kb on + strand, within EX28DRAFT_3275at 570.573 kb on - strand, within EX28DRAFT_3275at 570.574 kb on + strand, within EX28DRAFT_3275at 570.574 kb on + strand, within EX28DRAFT_3275at 570.574 kb on + strand, within EX28DRAFT_3275at 570.574 kb on + strand, within EX28DRAFT_3275at 570.781 kb on + strand, within EX28DRAFT_3275at 570.944 kb on + strand, within EX28DRAFT_3275at 571.071 kb on - strand, within EX28DRAFT_3275at 571.122 kb on + strand, within EX28DRAFT_3275at 571.122 kb on + strand, within EX28DRAFT_3275at 571.162 kb on + strand, within EX28DRAFT_3275at 571.189 kb on + strand, within EX28DRAFT_3275at 571.189 kb on + strand, within EX28DRAFT_3275at 571.190 kb on - strand, within EX28DRAFT_3275at 571.193 kb on + strand, within EX28DRAFT_3275at 571.313 kb on + strand, within EX28DRAFT_3275at 571.319 kb on + strand, within EX28DRAFT_3275at 571.547 kb on - strand, within EX28DRAFT_3275at 571.803 kb on + strand, within EX28DRAFT_3275at 572.131 kb on + strand, within EX28DRAFT_3275at 572.132 kb on - strand, within EX28DRAFT_3275at 572.132 kb on - strand, within EX28DRAFT_3275at 572.162 kb on + strand, within EX28DRAFT_3275at 572.162 kb on + strand, within EX28DRAFT_3275at 572.162 kb on + strand, within EX28DRAFT_3275at 572.163 kb on - strand, within EX28DRAFT_3275at 572.190 kb on - strand, within EX28DRAFT_3275at 572.190 kb on - strand, within EX28DRAFT_3275at 572.259 kb on - strand, within EX28DRAFT_3275at 572.660 kb on + strand, within EX28DRAFT_3275at 572.678 kb on + strand, within EX28DRAFT_3275at 572.679 kb on - strand, within EX28DRAFT_3275at 572.725 kb on + strand, within EX28DRAFT_3275at 572.729 kb on + strand, within EX28DRAFT_3275at 572.745 kb on + strand, within EX28DRAFT_3275at 572.745 kb on + strand, within EX28DRAFT_3275at 572.924 kb on + strand, within EX28DRAFT_3275at 573.124 kb on + strand, within EX28DRAFT_3275at 573.124 kb on + strand, within EX28DRAFT_3275at 573.125 kb on - strand, within EX28DRAFT_3275at 573.125 kb on - strand, within EX28DRAFT_3275at 573.221 kb on + strand, within EX28DRAFT_3275at 573.405 kb on - strand, within EX28DRAFT_3275at 573.456 kb on + strand, within EX28DRAFT_3275at 573.476 kb on + strand, within EX28DRAFT_3275at 573.696 kb on - strand, within EX28DRAFT_3275at 573.859 kb on + strandat 573.860 kb on - strandat 573.911 kb on + strandat 573.911 kb on + strandat 573.990 kb on - strandat 574.290 kb on + strandat 574.291 kb on - strandat 574.291 kb on - strandat 574.291 kb on - strandat 574.291 kb on - strandat 574.293 kb on - strandat 574.467 kb on - strand, within EX28DRAFT_3276at 574.651 kb on + strand, within EX28DRAFT_3276at 574.651 kb on + strand, within EX28DRAFT_3276at 575.001 kb on - strand, within EX28DRAFT_3276at 575.229 kb on - strand, within EX28DRAFT_3276

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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568,818 - EX28DRAFT_3274 0.65 -0.2
568,822 - EX28DRAFT_3274 0.66 +0.0
568,822 - EX28DRAFT_3274 0.66 -0.0
568,822 - EX28DRAFT_3274 0.66 -1.3
568,822 - EX28DRAFT_3274 0.66 +0.5
568,859 + EX28DRAFT_3274 0.69 +0.3
569,095 - +1.0
569,101 + +0.0
569,111 - +0.1
569,214 + -1.2
569,215 - -0.6
569,532 + -1.9
569,532 + -0.9
569,616 + -2.5
569,621 - -3.8
569,804 + -0.7
569,806 + -1.3
569,806 + -4.5
569,807 - -1.5
569,807 - -4.2
569,807 - -3.9
569,807 - -3.9
569,807 - -2.9
569,813 + -3.7
569,814 - +1.9
569,836 + -0.7
569,865 + -3.4
569,865 + -4.4
569,865 + -3.6
569,866 - -2.5
569,866 - -2.2
569,866 - -0.3
569,866 - -3.3
569,866 - -1.4
569,866 - -3.0
569,889 + -3.1
570,215 - -2.4
570,330 - EX28DRAFT_3275 0.12 -1.0
570,362 + EX28DRAFT_3275 0.12 -2.5
570,362 + EX28DRAFT_3275 0.12 -3.1
570,362 + EX28DRAFT_3275 0.12 -5.3
570,362 + EX28DRAFT_3275 0.12 -2.2
570,362 + EX28DRAFT_3275 0.12 -1.8
570,362 + EX28DRAFT_3275 0.12 -3.1
570,362 + EX28DRAFT_3275 0.12 -1.7
570,363 - EX28DRAFT_3275 0.12 -1.5
570,363 - EX28DRAFT_3275 0.12 -1.7
570,363 - EX28DRAFT_3275 0.12 +1.9
570,363 - EX28DRAFT_3275 0.12 -1.2
570,402 - EX28DRAFT_3275 0.13 -3.2
570,569 - EX28DRAFT_3275 0.17 -3.1
570,569 - EX28DRAFT_3275 0.17 -2.1
570,572 + EX28DRAFT_3275 0.17 -0.9
570,572 + EX28DRAFT_3275 0.17 -2.2
570,572 + EX28DRAFT_3275 0.17 -3.9
570,572 + EX28DRAFT_3275 0.17 -1.4
570,573 - EX28DRAFT_3275 0.17 -3.1
570,574 + EX28DRAFT_3275 0.17 -2.2
570,574 + EX28DRAFT_3275 0.17 -3.3
570,574 + EX28DRAFT_3275 0.17 +0.3
570,574 + EX28DRAFT_3275 0.17 -3.5
570,781 + EX28DRAFT_3275 0.22 -3.1
570,944 + EX28DRAFT_3275 0.25 -1.5
571,071 - EX28DRAFT_3275 0.28 -4.0
571,122 + EX28DRAFT_3275 0.29 -4.1
571,122 + EX28DRAFT_3275 0.29 -2.2
571,162 + EX28DRAFT_3275 0.30 +1.9
571,189 + EX28DRAFT_3275 0.31 -3.1
571,189 + EX28DRAFT_3275 0.31 +0.9
571,190 - EX28DRAFT_3275 0.31 -0.7
571,193 + EX28DRAFT_3275 0.31 -2.8
571,313 + EX28DRAFT_3275 0.34 +1.5
571,319 + EX28DRAFT_3275 0.34 -4.5
571,547 - EX28DRAFT_3275 0.39 -2.3
571,803 + EX28DRAFT_3275 0.45 -2.1
572,131 + EX28DRAFT_3275 0.52 -2.4
572,132 - EX28DRAFT_3275 0.52 -3.2
572,132 - EX28DRAFT_3275 0.52 -0.6
572,162 + EX28DRAFT_3275 0.53 -1.9
572,162 + EX28DRAFT_3275 0.53 -3.3
572,162 + EX28DRAFT_3275 0.53 -0.1
572,163 - EX28DRAFT_3275 0.53 -1.5
572,190 - EX28DRAFT_3275 0.53 -1.4
572,190 - EX28DRAFT_3275 0.53 -0.4
572,259 - EX28DRAFT_3275 0.55 +0.9
572,660 + EX28DRAFT_3275 0.64 -3.6
572,678 + EX28DRAFT_3275 0.64 -1.5
572,679 - EX28DRAFT_3275 0.64 -2.9
572,725 + EX28DRAFT_3275 0.65 -3.4
572,729 + EX28DRAFT_3275 0.66 -3.4
572,745 + EX28DRAFT_3275 0.66 -2.8
572,745 + EX28DRAFT_3275 0.66 -3.0
572,924 + EX28DRAFT_3275 0.70 +1.9
573,124 + EX28DRAFT_3275 0.74 -0.2
573,124 + EX28DRAFT_3275 0.74 +0.3
573,125 - EX28DRAFT_3275 0.74 +0.4
573,125 - EX28DRAFT_3275 0.74 -0.1
573,221 + EX28DRAFT_3275 0.77 -3.3
573,405 - EX28DRAFT_3275 0.81 -1.5
573,456 + EX28DRAFT_3275 0.82 -0.8
573,476 + EX28DRAFT_3275 0.82 -2.9
573,696 - EX28DRAFT_3275 0.87 -1.9
573,859 + -2.2
573,860 - -3.5
573,911 + -3.3
573,911 + -0.4
573,990 - -2.0
574,290 + -2.8
574,291 - -0.7
574,291 - -2.2
574,291 - +1.0
574,291 - -2.4
574,293 - -3.6
574,467 - EX28DRAFT_3276 0.13 -2.7
574,651 + EX28DRAFT_3276 0.26 -3.6
574,651 + EX28DRAFT_3276 0.26 -3.8
575,001 - EX28DRAFT_3276 0.51 -2.4
575,229 - EX28DRAFT_3276 0.67 -4.5

Or see this region's nucleotide sequence