Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3242

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3241 and EX28DRAFT_3242 are separated by 229 nucleotidesEX28DRAFT_3242 and EX28DRAFT_3243 are separated by 60 nucleotides EX28DRAFT_3241: EX28DRAFT_3241 - Geranylgeranyl pyrophosphate synthase, at 537,136 to 538,107 _3241 EX28DRAFT_3242: EX28DRAFT_3242 - transcriptional regulator, Nlp family, at 538,337 to 538,624 _3242 EX28DRAFT_3243: EX28DRAFT_3243 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 538,685 to 539,944 _3243 Position (kb) 538 539Strain fitness (log2 ratio) -1 0 1at 538.159 kb on + strandat 538.277 kb on + strandat 538.277 kb on + strandat 538.372 kb on + strand, within EX28DRAFT_3242at 538.373 kb on - strand, within EX28DRAFT_3242at 538.488 kb on + strand, within EX28DRAFT_3242at 538.567 kb on + strand, within EX28DRAFT_3242at 538.686 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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538,159 + -0.1
538,277 + +0.8
538,277 + +0.1
538,372 + EX28DRAFT_3242 0.12 +0.2
538,373 - EX28DRAFT_3242 0.12 -1.6
538,488 + EX28DRAFT_3242 0.52 -0.2
538,567 + EX28DRAFT_3242 0.80 -0.8
538,686 + -0.2

Or see this region's nucleotide sequence