Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3082 and EX28DRAFT_3083 are separated by 226 nucleotides EX28DRAFT_3083 and EX28DRAFT_3084 are separated by 60 nucleotides
EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504
_3082
EX28DRAFT_3083: EX28DRAFT_3083 - SH3 domain protein, at 395,731 to 396,354
_3083
EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656
_3084
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 395.254 kb on + strand, within EX28DRAFT_3082 at 395.254 kb on + strand, within EX28DRAFT_3082 at 395.271 kb on + strand, within EX28DRAFT_3082 at 395.271 kb on + strand, within EX28DRAFT_3082 at 395.387 kb on - strand at 395.390 kb on + strand at 395.390 kb on + strand at 395.391 kb on - strand at 395.391 kb on - strand at 395.391 kb on - strand at 395.393 kb on + strand at 395.393 kb on + strand at 395.432 kb on + strand at 395.485 kb on - strand at 395.574 kb on + strand at 395.575 kb on - strand at 395.575 kb on - strand at 395.578 kb on + strand at 395.578 kb on + strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.581 kb on + strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.625 kb on - strand at 395.632 kb on + strand at 395.699 kb on + strand at 395.699 kb on + strand at 395.700 kb on - strand at 395.711 kb on - strand at 395.723 kb on - strand at 395.729 kb on + strand at 395.730 kb on - strand at 395.740 kb on - strand at 395.760 kb on + strand at 395.761 kb on - strand at 395.765 kb on + strand at 395.766 kb on - strand at 395.840 kb on + strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.860 kb on - strand, within EX28DRAFT_3083 at 396.197 kb on + strand, within EX28DRAFT_3083 at 396.255 kb on + strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.259 kb on + strand, within EX28DRAFT_3083 at 396.260 kb on - strand, within EX28DRAFT_3083 at 396.352 kb on + strand at 396.352 kb on + strand at 396.353 kb on - strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.379 kb on + strand at 396.380 kb on - strand at 396.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 395,254 + EX28DRAFT_3082 0.81 -1.8 395,254 + EX28DRAFT_3082 0.81 -2.3 395,271 + EX28DRAFT_3082 0.82 -2.6 395,271 + EX28DRAFT_3082 0.82 -1.8 395,387 - -1.7 395,390 + -2.0 395,390 + -3.2 395,391 - -2.9 395,391 - -2.0 395,391 - -1.5 395,393 + -1.8 395,393 + -0.9 395,432 + -0.4 395,485 - -1.5 395,574 + -0.5 395,575 - -1.0 395,575 - -1.0 395,578 + -0.7 395,578 + -1.5 395,579 - +0.2 395,579 - +0.7 395,579 - +0.7 395,579 - -0.1 395,581 + -1.3 395,582 - -0.0 395,582 - +0.5 395,582 - +0.8 395,625 - -0.4 395,632 + -0.5 395,699 + +0.2 395,699 + +0.1 395,700 - +0.3 395,711 - +0.5 395,723 - -0.1 395,729 + +0.7 395,730 - -0.7 395,740 - +0.4 395,760 + +1.4 395,761 - -0.2 395,765 + -0.1 395,766 - -0.4 395,840 + EX28DRAFT_3083 0.17 -0.5 395,845 - EX28DRAFT_3083 0.18 +0.3 395,845 - EX28DRAFT_3083 0.18 +0.2 395,860 - EX28DRAFT_3083 0.21 -0.2 396,197 + EX28DRAFT_3083 0.75 -0.7 396,255 + EX28DRAFT_3083 0.84 -0.7 396,256 - EX28DRAFT_3083 0.84 -1.1 396,256 - EX28DRAFT_3083 0.84 +0.1 396,256 - EX28DRAFT_3083 0.84 +0.0 396,256 - EX28DRAFT_3083 0.84 -0.8 396,259 + EX28DRAFT_3083 0.85 +0.0 396,260 - EX28DRAFT_3083 0.85 -0.2 396,352 + -0.3 396,352 + +0.1 396,353 - -0.6 396,375 + +1.2 396,375 + -0.4 396,375 + +1.0 396,375 + -0.5 396,376 - -0.5 396,376 - -1.8 396,376 - -0.6 396,379 + -0.4 396,380 - -1.2 396,380 - -1.0
Or see this region's nucleotide sequence