Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2985 and EX28DRAFT_2986 are separated by 87 nucleotides EX28DRAFT_2986 and EX28DRAFT_2987 overlap by 1 nucleotides EX28DRAFT_2987 and EX28DRAFT_2988 are separated by 10 nucleotides
EX28DRAFT_2985: EX28DRAFT_2985 - glutathione synthase (EC 6.3.2.3), at 297,792 to 298,739
_2985
EX28DRAFT_2986: EX28DRAFT_2986 - Putative transcriptional regulator, at 298,827 to 299,387
_2986
EX28DRAFT_2987: EX28DRAFT_2987 - RNAse H-fold protein YqgF, at 299,387 to 299,803
_2987
EX28DRAFT_2988: EX28DRAFT_2988 - pilus retraction protein PilT, at 299,814 to 300,794
_2988
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1
2 at 297.901 kb on - strand, within EX28DRAFT_2985 at 297.903 kb on - strand, within EX28DRAFT_2985 at 298.074 kb on + strand, within EX28DRAFT_2985 at 298.074 kb on + strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.080 kb on + strand, within EX28DRAFT_2985 at 298.081 kb on - strand, within EX28DRAFT_2985 at 298.081 kb on - strand, within EX28DRAFT_2985 at 298.089 kb on + strand, within EX28DRAFT_2985 at 298.170 kb on + strand, within EX28DRAFT_2985 at 298.390 kb on - strand, within EX28DRAFT_2985 at 298.466 kb on + strand, within EX28DRAFT_2985 at 298.467 kb on - strand, within EX28DRAFT_2985 at 298.738 kb on - strand at 298.743 kb on - strand at 298.743 kb on - strand at 298.743 kb on - strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.751 kb on + strand at 298.752 kb on - strand at 298.752 kb on - strand at 298.752 kb on - strand at 298.754 kb on + strand at 298.755 kb on - strand at 298.801 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.899 kb on + strand, within EX28DRAFT_2986 at 298.911 kb on + strand, within EX28DRAFT_2986 at 299.098 kb on + strand, within EX28DRAFT_2986 at 299.111 kb on + strand, within EX28DRAFT_2986 at 299.211 kb on + strand, within EX28DRAFT_2986 at 299.815 kb on + strand at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.966 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.311 kb on + strand, within EX28DRAFT_2988 at 300.312 kb on - strand, within EX28DRAFT_2988 at 300.342 kb on - strand, within EX28DRAFT_2988
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 297,901 - EX28DRAFT_2985 0.11 +0.4 297,903 - EX28DRAFT_2985 0.12 -0.5 298,074 + EX28DRAFT_2985 0.30 +0.8 298,074 + EX28DRAFT_2985 0.30 +0.5 298,075 - EX28DRAFT_2985 0.30 +0.3 298,075 - EX28DRAFT_2985 0.30 -0.5 298,075 - EX28DRAFT_2985 0.30 +0.4 298,075 - EX28DRAFT_2985 0.30 +0.7 298,080 + EX28DRAFT_2985 0.30 +1.3 298,081 - EX28DRAFT_2985 0.30 +1.4 298,081 - EX28DRAFT_2985 0.30 -1.1 298,089 + EX28DRAFT_2985 0.31 +0.6 298,170 + EX28DRAFT_2985 0.40 +0.4 298,390 - EX28DRAFT_2985 0.63 -0.4 298,466 + EX28DRAFT_2985 0.71 +1.2 298,467 - EX28DRAFT_2985 0.71 +1.1 298,738 - +0.7 298,743 - -0.4 298,743 - +0.3 298,743 - +0.9 298,748 + -0.4 298,748 + -0.3 298,748 + +0.3 298,748 + +1.6 298,749 - +0.6 298,749 - -0.2 298,749 - +0.3 298,749 - +1.1 298,751 + +0.4 298,752 - +0.1 298,752 - -0.2 298,752 - -0.2 298,754 + -0.2 298,755 - +0.7 298,801 + -0.5 298,816 + +2.6 298,816 + +0.8 298,816 + +0.5 298,816 + -0.3 298,816 + +0.2 298,899 + EX28DRAFT_2986 0.13 +1.0 298,911 + EX28DRAFT_2986 0.15 +0.1 299,098 + EX28DRAFT_2986 0.48 +0.4 299,111 + EX28DRAFT_2986 0.51 +0.6 299,211 + EX28DRAFT_2986 0.68 +0.7 299,815 + -0.8 299,965 + EX28DRAFT_2988 0.15 -0.1 299,965 + EX28DRAFT_2988 0.15 +0.2 299,965 + EX28DRAFT_2988 0.15 +0.6 299,966 - EX28DRAFT_2988 0.15 +0.4 300,308 - EX28DRAFT_2988 0.50 -0.4 300,308 - EX28DRAFT_2988 0.50 +0.1 300,311 + EX28DRAFT_2988 0.51 +0.0 300,312 - EX28DRAFT_2988 0.51 +0.3 300,342 - EX28DRAFT_2988 0.54 -0.3
Or see this region's nucleotide sequence