Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2881

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2879 and EX28DRAFT_2880 are separated by 112 nucleotidesEX28DRAFT_2880 and EX28DRAFT_2881 are separated by 110 nucleotidesEX28DRAFT_2881 and EX28DRAFT_2882 overlap by 8 nucleotidesEX28DRAFT_2882 and EX28DRAFT_2883 are separated by 39 nucleotides EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279 _2879 EX28DRAFT_2880: EX28DRAFT_2880 - 5'-3' exonuclease (including N-terminal domain of PolI), at 187,392 to 188,147 _2880 EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358 _2881 EX28DRAFT_2882: EX28DRAFT_2882 - Uncharacterized small membrane protein, at 189,351 to 189,746 _2882 EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703 _2883 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.334 kb on + strandat 187.335 kb on - strandat 187.376 kb on - strandat 187.387 kb on + strandat 187.405 kb on + strandat 187.405 kb on + strandat 187.818 kb on + strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 188.001 kb on + strand, within EX28DRAFT_2880at 188.002 kb on - strand, within EX28DRAFT_2880at 188.092 kb on + strandat 188.092 kb on + strandat 188.104 kb on + strandat 188.104 kb on + strandat 188.123 kb on - strandat 188.137 kb on + strandat 188.305 kb on + strandat 188.305 kb on + strandat 188.306 kb on - strandat 188.306 kb on - strandat 188.310 kb on - strandat 188.310 kb on - strandat 188.358 kb on - strandat 188.358 kb on - strandat 188.394 kb on + strand, within EX28DRAFT_2881at 188.555 kb on - strand, within EX28DRAFT_2881at 188.659 kb on + strand, within EX28DRAFT_2881at 188.659 kb on + strand, within EX28DRAFT_2881at 188.680 kb on - strand, within EX28DRAFT_2881at 188.680 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.843 kb on - strand, within EX28DRAFT_2881at 188.868 kb on + strand, within EX28DRAFT_2881at 188.875 kb on - strand, within EX28DRAFT_2881at 188.881 kb on + strand, within EX28DRAFT_2881at 188.882 kb on - strand, within EX28DRAFT_2881at 188.883 kb on + strand, within EX28DRAFT_2881at 188.884 kb on - strand, within EX28DRAFT_2881at 188.911 kb on + strand, within EX28DRAFT_2881at 188.940 kb on + strand, within EX28DRAFT_2881at 189.020 kb on - strand, within EX28DRAFT_2881at 189.237 kb on + strand, within EX28DRAFT_2881at 189.341 kb on + strandat 189.341 kb on + strandat 189.341 kb on + strandat 189.342 kb on - strandat 189.403 kb on - strand, within EX28DRAFT_2882at 189.405 kb on + strand, within EX28DRAFT_2882at 189.444 kb on - strand, within EX28DRAFT_2882at 189.484 kb on + strand, within EX28DRAFT_2882at 189.509 kb on + strand, within EX28DRAFT_2882at 189.548 kb on + strand, within EX28DRAFT_2882at 189.611 kb on - strand, within EX28DRAFT_2882at 189.663 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.701 kb on + strand, within EX28DRAFT_2882at 189.751 kb on - strandat 189.751 kb on - strandat 189.788 kb on - strandat 189.797 kb on - strandat 189.867 kb on - strandat 189.901 kb on + strand, within EX28DRAFT_2883at 189.902 kb on - strand, within EX28DRAFT_2883at 189.924 kb on + strand, within EX28DRAFT_2883at 189.925 kb on - strand, within EX28DRAFT_2883at 189.925 kb on - strand, within EX28DRAFT_2883at 189.933 kb on - strand, within EX28DRAFT_2883at 190.070 kb on + strand, within EX28DRAFT_2883at 190.070 kb on + strand, within EX28DRAFT_2883at 190.083 kb on + strand, within EX28DRAFT_2883at 190.084 kb on - strand, within EX28DRAFT_2883at 190.182 kb on + strand, within EX28DRAFT_2883at 190.222 kb on + strand, within EX28DRAFT_2883

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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187,334 + -1.0
187,335 - +0.2
187,376 - -0.5
187,387 + -0.4
187,405 + -0.0
187,405 + -0.0
187,818 + EX28DRAFT_2880 0.56 +0.3
187,819 - EX28DRAFT_2880 0.56 +0.7
187,819 - EX28DRAFT_2880 0.56 +0.3
188,001 + EX28DRAFT_2880 0.81 -0.4
188,002 - EX28DRAFT_2880 0.81 +0.3
188,092 + -2.0
188,092 + +0.2
188,104 + +0.0
188,104 + +0.1
188,123 - +0.1
188,137 + +0.4
188,305 + -0.8
188,305 + -1.1
188,306 - -0.2
188,306 - +1.9
188,310 - +0.9
188,310 - +0.5
188,358 - +0.4
188,358 - -0.8
188,394 + EX28DRAFT_2881 0.12 +1.3
188,555 - EX28DRAFT_2881 0.27 -1.0
188,659 + EX28DRAFT_2881 0.36 -0.7
188,659 + EX28DRAFT_2881 0.36 +0.3
188,680 - EX28DRAFT_2881 0.38 -0.1
188,680 - EX28DRAFT_2881 0.38 -0.3
188,719 - EX28DRAFT_2881 0.42 -0.0
188,719 - EX28DRAFT_2881 0.42 +0.6
188,719 - EX28DRAFT_2881 0.42 +0.5
188,843 - EX28DRAFT_2881 0.53 +0.7
188,868 + EX28DRAFT_2881 0.55 -0.3
188,875 - EX28DRAFT_2881 0.56 +0.1
188,881 + EX28DRAFT_2881 0.57 +0.9
188,882 - EX28DRAFT_2881 0.57 -0.4
188,883 + EX28DRAFT_2881 0.57 -0.1
188,884 - EX28DRAFT_2881 0.57 -0.3
188,911 + EX28DRAFT_2881 0.59 +0.3
188,940 + EX28DRAFT_2881 0.62 -0.1
189,020 - EX28DRAFT_2881 0.69 +1.1
189,237 + EX28DRAFT_2881 0.89 +0.2
189,341 + +0.1
189,341 + -0.5
189,341 + -0.3
189,342 - +0.4
189,403 - EX28DRAFT_2882 0.13 -0.1
189,405 + EX28DRAFT_2882 0.14 -0.1
189,444 - EX28DRAFT_2882 0.23 +0.1
189,484 + EX28DRAFT_2882 0.34 +0.3
189,509 + EX28DRAFT_2882 0.40 +0.3
189,548 + EX28DRAFT_2882 0.50 +0.4
189,611 - EX28DRAFT_2882 0.66 +0.2
189,663 + EX28DRAFT_2882 0.79 +0.1
189,666 + EX28DRAFT_2882 0.80 +0.0
189,666 + EX28DRAFT_2882 0.80 +0.1
189,666 + EX28DRAFT_2882 0.80 -0.5
189,666 + EX28DRAFT_2882 0.80 -0.2
189,667 - EX28DRAFT_2882 0.80 -0.6
189,667 - EX28DRAFT_2882 0.80 +0.3
189,667 - EX28DRAFT_2882 0.80 +0.5
189,667 - EX28DRAFT_2882 0.80 +0.1
189,701 + EX28DRAFT_2882 0.88 +1.3
189,751 - +1.0
189,751 - +0.6
189,788 - +0.6
189,797 - +0.6
189,867 - +0.4
189,901 + EX28DRAFT_2883 0.13 -0.9
189,902 - EX28DRAFT_2883 0.13 -0.6
189,924 + EX28DRAFT_2883 0.15 -0.3
189,925 - EX28DRAFT_2883 0.15 -1.4
189,925 - EX28DRAFT_2883 0.15 -0.0
189,933 - EX28DRAFT_2883 0.16 -0.3
190,070 + EX28DRAFT_2883 0.31 -0.5
190,070 + EX28DRAFT_2883 0.31 +0.9
190,083 + EX28DRAFT_2883 0.32 +0.4
190,084 - EX28DRAFT_2883 0.32 -0.1
190,182 + EX28DRAFT_2883 0.43 -0.2
190,222 + EX28DRAFT_2883 0.47 -0.4

Or see this region's nucleotide sequence