Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2871 and EX28DRAFT_2872 are separated by 24 nucleotides EX28DRAFT_2872 and EX28DRAFT_2873 overlap by 4 nucleotides EX28DRAFT_2873 and EX28DRAFT_2874 are separated by 55 nucleotides EX28DRAFT_2874 and EX28DRAFT_2875 are separated by 218 nucleotides
EX28DRAFT_2871: EX28DRAFT_2871 - Flavodoxins, at 178,890 to 179,339
_2871
EX28DRAFT_2872: EX28DRAFT_2872 - Pseudouridylate synthases, 23S RNA-specific, at 179,364 to 180,140
_2872
EX28DRAFT_2873: EX28DRAFT_2873 - Uncharacterized protein conserved in bacteria, at 180,137 to 180,466
_2873
EX28DRAFT_2874: EX28DRAFT_2874 - RNA, at 180,522 to 180,878
_2874
EX28DRAFT_2875: EX28DRAFT_2875 - Syd protein (SUKH-2), at 181,097 to 181,642
_2875
Position (kb) 180
181 Strain fitness (log2 ratio) -1
0
1 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.192 kb on + strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.268 kb on + strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.343 kb on - strand at 179.343 kb on - strand at 179.343 kb on - strand at 180.302 kb on + strand, within EX28DRAFT_2873 at 180.466 kb on + strand at 180.467 kb on - strand at 180.469 kb on + strand at 180.503 kb on + strand at 180.503 kb on + strand at 180.504 kb on - strand at 180.543 kb on - strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.894 kb on - strand at 180.919 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 181.063 kb on - strand at 181.099 kb on - strand at 181.213 kb on + strand, within EX28DRAFT_2875 at 181.264 kb on + strand, within EX28DRAFT_2875 at 181.355 kb on - strand, within EX28DRAFT_2875 at 181.401 kb on + strand, within EX28DRAFT_2875
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 179,188 + EX28DRAFT_2871 0.66 -0.9 179,188 + EX28DRAFT_2871 0.66 -1.4 179,188 + EX28DRAFT_2871 0.66 -1.2 179,189 - EX28DRAFT_2871 0.66 -0.4 179,189 - EX28DRAFT_2871 0.66 -0.4 179,192 + EX28DRAFT_2871 0.67 -1.0 179,193 - EX28DRAFT_2871 0.67 -0.8 179,193 - EX28DRAFT_2871 0.67 +0.1 179,193 - EX28DRAFT_2871 0.67 -1.0 179,268 + EX28DRAFT_2871 0.84 -1.2 179,269 - EX28DRAFT_2871 0.84 -1.0 179,269 - EX28DRAFT_2871 0.84 -0.2 179,269 - EX28DRAFT_2871 0.84 -0.3 179,343 - -0.9 179,343 - +0.0 179,343 - +0.7 180,302 + EX28DRAFT_2873 0.50 -0.8 180,466 + -0.1 180,467 - -0.1 180,469 + +0.1 180,503 + -0.4 180,503 + -0.4 180,504 - -0.2 180,543 - +0.2 180,893 + +0.0 180,893 + +0.1 180,893 + -0.5 180,894 - +0.1 180,919 - -0.7 180,952 - -0.0 180,952 - +0.1 181,063 - -0.4 181,099 - +0.2 181,213 + EX28DRAFT_2875 0.21 -0.0 181,264 + EX28DRAFT_2875 0.31 +0.7 181,355 - EX28DRAFT_2875 0.47 +1.0 181,401 + EX28DRAFT_2875 0.56 -0.3
Or see this region's nucleotide sequence