Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2809 and EX28DRAFT_2810 overlap by 4 nucleotides EX28DRAFT_2810 and EX28DRAFT_2811 overlap by 1 nucleotides EX28DRAFT_2811 and EX28DRAFT_2812 are separated by 9 nucleotides
EX28DRAFT_2809: EX28DRAFT_2809 - Formate hydrogenlyase maturation protein HycH, at 113,271 to 113,681
_2809
EX28DRAFT_2810: EX28DRAFT_2810 - Ni,Fe-hydrogenase III small subunit, at 113,678 to 114,445
_2810
EX28DRAFT_2811: EX28DRAFT_2811 - Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I), at 114,445 to 114,987
_2811
EX28DRAFT_2812: EX28DRAFT_2812 - Ni,Fe-hydrogenase III large subunit, at 114,997 to 116,706
_2812
Position (kb) 114
115 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 113.590 kb on + strand, within EX28DRAFT_2809 at 113.590 kb on + strand, within EX28DRAFT_2809 at 113.593 kb on + strand, within EX28DRAFT_2809 at 113.594 kb on - strand, within EX28DRAFT_2809 at 113.594 kb on - strand, within EX28DRAFT_2809 at 113.640 kb on - strand, within EX28DRAFT_2809 at 113.646 kb on - strand at 113.705 kb on - strand at 113.705 kb on - strand at 114.024 kb on + strand, within EX28DRAFT_2810 at 114.331 kb on - strand, within EX28DRAFT_2810 at 114.331 kb on - strand, within EX28DRAFT_2810 at 114.463 kb on - strand at 114.701 kb on + strand, within EX28DRAFT_2811 at 114.702 kb on - strand, within EX28DRAFT_2811 at 114.702 kb on - strand, within EX28DRAFT_2811 at 114.777 kb on + strand, within EX28DRAFT_2811 at 114.778 kb on - strand, within EX28DRAFT_2811 at 114.981 kb on + strand at 114.982 kb on - strand at 114.982 kb on - strand at 114.982 kb on - strand at 114.999 kb on - strand at 115.049 kb on + strand at 115.113 kb on - strand at 115.173 kb on + strand, within EX28DRAFT_2812 at 115.174 kb on - strand, within EX28DRAFT_2812 at 115.174 kb on - strand, within EX28DRAFT_2812 at 115.175 kb on + strand, within EX28DRAFT_2812 at 115.175 kb on + strand, within EX28DRAFT_2812 at 115.175 kb on + strand, within EX28DRAFT_2812 at 115.176 kb on - strand, within EX28DRAFT_2812 at 115.199 kb on + strand, within EX28DRAFT_2812 at 115.317 kb on - strand, within EX28DRAFT_2812 at 115.733 kb on + strand, within EX28DRAFT_2812 at 115.804 kb on - strand, within EX28DRAFT_2812 at 115.953 kb on - strand, within EX28DRAFT_2812
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 113,590 + EX28DRAFT_2809 0.78 -0.2 113,590 + EX28DRAFT_2809 0.78 +0.5 113,593 + EX28DRAFT_2809 0.78 +0.2 113,594 - EX28DRAFT_2809 0.79 +0.5 113,594 - EX28DRAFT_2809 0.79 +0.2 113,640 - EX28DRAFT_2809 0.90 +0.2 113,646 - -4.9 113,705 - +0.6 113,705 - -0.3 114,024 + EX28DRAFT_2810 0.45 -0.3 114,331 - EX28DRAFT_2810 0.85 -0.2 114,331 - EX28DRAFT_2810 0.85 +0.0 114,463 - -0.1 114,701 + EX28DRAFT_2811 0.47 +0.6 114,702 - EX28DRAFT_2811 0.47 +0.1 114,702 - EX28DRAFT_2811 0.47 +0.6 114,777 + EX28DRAFT_2811 0.61 +0.5 114,778 - EX28DRAFT_2811 0.61 +0.1 114,981 + -0.5 114,982 - -0.0 114,982 - -0.0 114,982 - -0.0 114,999 - +0.4 115,049 + +0.2 115,113 - +0.2 115,173 + EX28DRAFT_2812 0.10 -0.1 115,174 - EX28DRAFT_2812 0.10 +0.3 115,174 - EX28DRAFT_2812 0.10 +0.3 115,175 + EX28DRAFT_2812 0.10 +2.3 115,175 + EX28DRAFT_2812 0.10 +0.8 115,175 + EX28DRAFT_2812 0.10 -0.1 115,176 - EX28DRAFT_2812 0.10 -0.0 115,199 + EX28DRAFT_2812 0.12 +0.3 115,317 - EX28DRAFT_2812 0.19 +0.1 115,733 + EX28DRAFT_2812 0.43 +0.2 115,804 - EX28DRAFT_2812 0.47 -0.0 115,953 - EX28DRAFT_2812 0.56 -0.4
Or see this region's nucleotide sequence