Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2588 and EX28DRAFT_2589 are separated by 99 nucleotides EX28DRAFT_2589 and EX28DRAFT_2590 are separated by 210 nucleotides EX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotides EX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotides
EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980
_2588
EX28DRAFT_2589: EX28DRAFT_2589 - Sigma-S stabilisation anti-adaptor protein, at 2,624,080 to 2,624,340
_2589
EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765
_2590
EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617
_2591
EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821
_2592
Position (kb)
2624
2625
2626 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2623.663 kb on - strand, within EX28DRAFT_2588 at 2623.664 kb on + strand, within EX28DRAFT_2588 at 2623.665 kb on - strand, within EX28DRAFT_2588 at 2623.922 kb on + strand at 2623.996 kb on + strand at 2624.003 kb on - strand at 2624.003 kb on - strand at 2624.007 kb on - strand at 2624.027 kb on + strand at 2624.029 kb on + strand at 2624.029 kb on + strand at 2624.030 kb on - strand at 2624.030 kb on - strand at 2624.030 kb on - strand at 2624.052 kb on - strand at 2624.065 kb on - strand at 2624.111 kb on - strand, within EX28DRAFT_2589 at 2624.501 kb on + strand at 2624.505 kb on + strand at 2624.506 kb on - strand at 2624.616 kb on + strand at 2624.650 kb on + strand at 2624.718 kb on - strand, within EX28DRAFT_2590 at 2624.718 kb on - strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.722 kb on - strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.736 kb on - strand, within EX28DRAFT_2590 at 2624.746 kb on - strand, within EX28DRAFT_2590 at 2624.771 kb on + strand, within EX28DRAFT_2590 at 2625.103 kb on - strand, within EX28DRAFT_2590 at 2625.184 kb on - strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.268 kb on + strand, within EX28DRAFT_2590 at 2625.355 kb on - strand, within EX28DRAFT_2590 at 2625.671 kb on + strand at 2625.672 kb on - strand at 2625.774 kb on - strand at 2625.866 kb on + strand at 2625.866 kb on + strand at 2625.867 kb on - strand at 2625.925 kb on + strand at 2625.928 kb on + strand at 2625.928 kb on + strand at 2625.994 kb on - strand at 2625.995 kb on + strand at 2625.995 kb on + strand at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.484 kb on + strand, within EX28DRAFT_2591 at 2626.485 kb on - strand, within EX28DRAFT_2591 at 2626.495 kb on - strand, within EX28DRAFT_2591 at 2626.528 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.540 kb on - strand, within EX28DRAFT_2591 at 2626.541 kb on + strand, within EX28DRAFT_2591 at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.689 kb on - strand at 2626.689 kb on - strand at 2626.727 kb on - strand at 2626.741 kb on + strand at 2626.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,623,663 - EX28DRAFT_2588 0.78 -2.5 2,623,664 + EX28DRAFT_2588 0.78 -0.4 2,623,665 - EX28DRAFT_2588 0.78 +0.2 2,623,922 + +0.8 2,623,996 + -0.3 2,624,003 - -2.1 2,624,003 - -0.0 2,624,007 - +1.8 2,624,027 + +1.8 2,624,029 + -0.7 2,624,029 + -0.3 2,624,030 - -0.2 2,624,030 - -0.6 2,624,030 - +0.4 2,624,052 - +0.6 2,624,065 - +0.0 2,624,111 - EX28DRAFT_2589 0.12 -0.0 2,624,501 + -0.1 2,624,505 + -1.4 2,624,506 - +0.1 2,624,616 + -0.8 2,624,650 + -0.1 2,624,718 - EX28DRAFT_2590 0.14 -0.8 2,624,718 - EX28DRAFT_2590 0.14 +1.7 2,624,721 + EX28DRAFT_2590 0.14 -0.0 2,624,721 + EX28DRAFT_2590 0.14 +0.1 2,624,721 + EX28DRAFT_2590 0.14 +0.3 2,624,722 - EX28DRAFT_2590 0.14 -0.3 2,624,733 + EX28DRAFT_2590 0.15 +0.2 2,624,733 + EX28DRAFT_2590 0.15 -0.2 2,624,733 + EX28DRAFT_2590 0.15 +0.5 2,624,736 - EX28DRAFT_2590 0.15 -0.2 2,624,746 - EX28DRAFT_2590 0.16 +0.1 2,624,771 + EX28DRAFT_2590 0.18 +0.2 2,625,103 - EX28DRAFT_2590 0.45 -0.3 2,625,184 - EX28DRAFT_2590 0.52 +0.1 2,625,264 + EX28DRAFT_2590 0.59 +0.0 2,625,264 + EX28DRAFT_2590 0.59 +0.1 2,625,264 + EX28DRAFT_2590 0.59 -0.7 2,625,265 - EX28DRAFT_2590 0.59 +0.1 2,625,265 - EX28DRAFT_2590 0.59 +0.5 2,625,265 - EX28DRAFT_2590 0.59 +0.2 2,625,268 + EX28DRAFT_2590 0.59 -0.2 2,625,355 - EX28DRAFT_2590 0.66 -0.7 2,625,671 + +1.2 2,625,672 - +0.7 2,625,774 - -0.0 2,625,866 + -1.0 2,625,866 + -0.2 2,625,867 - -0.5 2,625,925 + +0.3 2,625,928 + +0.5 2,625,928 + -0.2 2,625,994 - -0.2 2,625,995 + -0.4 2,625,995 + -0.3 2,626,482 + EX28DRAFT_2591 0.80 -0.1 2,626,482 + EX28DRAFT_2591 0.80 +0.3 2,626,482 + EX28DRAFT_2591 0.80 -0.3 2,626,482 + EX28DRAFT_2591 0.80 +1.1 2,626,482 + EX28DRAFT_2591 0.80 -0.4 2,626,483 - EX28DRAFT_2591 0.80 -0.1 2,626,483 - EX28DRAFT_2591 0.80 +0.6 2,626,483 - EX28DRAFT_2591 0.80 +0.3 2,626,483 - EX28DRAFT_2591 0.80 -0.1 2,626,484 + EX28DRAFT_2591 0.80 +0.1 2,626,485 - EX28DRAFT_2591 0.81 -0.1 2,626,495 - EX28DRAFT_2591 0.82 +1.6 2,626,528 - EX28DRAFT_2591 0.87 -0.2 2,626,539 - EX28DRAFT_2591 0.88 -0.4 2,626,539 - EX28DRAFT_2591 0.88 -0.1 2,626,540 - EX28DRAFT_2591 0.89 -0.4 2,626,541 + EX28DRAFT_2591 0.89 -0.4 2,626,683 + +0.6 2,626,683 + -0.5 2,626,683 + +0.1 2,626,684 - +0.1 2,626,684 - -0.0 2,626,684 - +0.1 2,626,689 - -0.2 2,626,689 - +0.5 2,626,727 - +0.1 2,626,741 + +0.4 2,626,742 - +0.3
Or see this region's nucleotide sequence