Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2515 and EX28DRAFT_2516 are separated by 33 nucleotides EX28DRAFT_2516 and EX28DRAFT_2517 are separated by 200 nucleotides EX28DRAFT_2517 and EX28DRAFT_2518 are separated by 95 nucleotides
EX28DRAFT_2515: EX28DRAFT_2515 - O-6-methylguanine DNA methyltransferase, at 2,545,790 to 2,546,101
_2515
EX28DRAFT_2516: EX28DRAFT_2516 - Uncharacterized protein conserved in bacteria, at 2,546,135 to 2,546,662
_2516
EX28DRAFT_2517: EX28DRAFT_2517 - acyl-CoA thioesterase II, at 2,546,863 to 2,547,723
_2517
EX28DRAFT_2518: EX28DRAFT_2518 - ammonium transporter, at 2,547,819 to 2,549,108
_2518
Position (kb)
2546
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1 at 2545.866 kb on - strand, within EX28DRAFT_2515 at 2545.866 kb on - strand, within EX28DRAFT_2515 at 2545.946 kb on - strand, within EX28DRAFT_2515 at 2546.095 kb on - strand at 2546.095 kb on - strand at 2546.096 kb on + strand at 2546.096 kb on + strand at 2546.097 kb on - strand at 2546.321 kb on - strand, within EX28DRAFT_2516 at 2546.352 kb on + strand, within EX28DRAFT_2516 at 2546.353 kb on - strand, within EX28DRAFT_2516 at 2546.353 kb on - strand, within EX28DRAFT_2516 at 2546.360 kb on + strand, within EX28DRAFT_2516 at 2546.457 kb on - strand, within EX28DRAFT_2516 at 2546.552 kb on - strand, within EX28DRAFT_2516 at 2546.633 kb on + strand at 2546.633 kb on + strand at 2546.634 kb on - strand at 2546.634 kb on - strand at 2546.634 kb on - strand at 2546.642 kb on + strand at 2546.642 kb on + strand at 2546.643 kb on - strand at 2546.643 kb on - strand at 2546.643 kb on - strand at 2546.723 kb on + strand at 2546.723 kb on + strand at 2546.723 kb on + strand at 2546.724 kb on - strand at 2546.821 kb on + strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.831 kb on - strand at 2546.831 kb on - strand at 2546.831 kb on - strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.863 kb on + strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.898 kb on - strand at 2546.954 kb on + strand, within EX28DRAFT_2517 at 2546.995 kb on + strand, within EX28DRAFT_2517 at 2546.996 kb on - strand, within EX28DRAFT_2517 at 2546.996 kb on - strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.050 kb on - strand, within EX28DRAFT_2517 at 2547.050 kb on - strand, within EX28DRAFT_2517 at 2547.088 kb on + strand, within EX28DRAFT_2517 at 2547.169 kb on + strand, within EX28DRAFT_2517 at 2547.169 kb on + strand, within EX28DRAFT_2517 at 2547.170 kb on - strand, within EX28DRAFT_2517 at 2547.170 kb on - strand, within EX28DRAFT_2517 at 2547.251 kb on + strand, within EX28DRAFT_2517 at 2547.252 kb on - strand, within EX28DRAFT_2517 at 2547.452 kb on - strand, within EX28DRAFT_2517 at 2547.602 kb on - strand, within EX28DRAFT_2517 at 2547.602 kb on - strand, within EX28DRAFT_2517 at 2547.616 kb on - strand, within EX28DRAFT_2517 at 2547.658 kb on + strand at 2547.660 kb on + strand at 2547.783 kb on + strand at 2547.783 kb on + strand at 2547.829 kb on + strand at 2547.829 kb on + strand at 2547.830 kb on - strand at 2547.830 kb on - strand at 2547.917 kb on + strand at 2547.917 kb on + strand at 2547.918 kb on - strand at 2547.965 kb on + strand, within EX28DRAFT_2518 at 2547.965 kb on + strand, within EX28DRAFT_2518 at 2547.965 kb on + strand, within EX28DRAFT_2518 at 2547.965 kb on + strand, within EX28DRAFT_2518 at 2547.966 kb on - strand, within EX28DRAFT_2518 at 2548.049 kb on + strand, within EX28DRAFT_2518 at 2548.415 kb on - strand, within EX28DRAFT_2518 at 2548.539 kb on + strand, within EX28DRAFT_2518 at 2548.539 kb on + strand, within EX28DRAFT_2518 at 2548.621 kb on + strand, within EX28DRAFT_2518 at 2548.621 kb on + strand, within EX28DRAFT_2518 at 2548.674 kb on - strand, within EX28DRAFT_2518 at 2548.712 kb on + strand, within EX28DRAFT_2518
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,545,866 - EX28DRAFT_2515 0.24 -1.0 2,545,866 - EX28DRAFT_2515 0.24 -0.5 2,545,946 - EX28DRAFT_2515 0.50 -0.1 2,546,095 - -0.2 2,546,095 - -0.2 2,546,096 + +0.5 2,546,096 + -0.3 2,546,097 - +0.0 2,546,321 - EX28DRAFT_2516 0.35 -0.1 2,546,352 + EX28DRAFT_2516 0.41 -0.0 2,546,353 - EX28DRAFT_2516 0.41 -0.8 2,546,353 - EX28DRAFT_2516 0.41 -1.0 2,546,360 + EX28DRAFT_2516 0.43 -0.3 2,546,457 - EX28DRAFT_2516 0.61 +0.2 2,546,552 - EX28DRAFT_2516 0.79 +0.2 2,546,633 + -0.4 2,546,633 + -0.7 2,546,634 - +0.0 2,546,634 - -1.0 2,546,634 - +0.1 2,546,642 + +0.4 2,546,642 + -0.3 2,546,643 - +0.0 2,546,643 - -0.2 2,546,643 - +0.5 2,546,723 + +0.4 2,546,723 + +0.8 2,546,723 + -0.2 2,546,724 - +0.2 2,546,821 + +0.4 2,546,822 - -0.3 2,546,822 - -0.6 2,546,822 - -0.1 2,546,822 - -0.8 2,546,831 - -0.9 2,546,831 - +0.3 2,546,831 - -0.3 2,546,862 + -0.1 2,546,862 + -0.3 2,546,862 + -0.7 2,546,862 + +0.0 2,546,862 + -0.2 2,546,862 + -0.4 2,546,862 + -0.3 2,546,863 + +0.2 2,546,863 - -0.5 2,546,863 - -0.2 2,546,863 - +0.5 2,546,863 - -0.4 2,546,863 - +0.1 2,546,898 - +0.0 2,546,954 + EX28DRAFT_2517 0.11 -0.0 2,546,995 + EX28DRAFT_2517 0.15 +0.1 2,546,996 - EX28DRAFT_2517 0.15 -0.2 2,546,996 - EX28DRAFT_2517 0.15 +0.5 2,547,049 + EX28DRAFT_2517 0.22 -0.5 2,547,049 + EX28DRAFT_2517 0.22 -0.6 2,547,049 + EX28DRAFT_2517 0.22 -0.6 2,547,050 - EX28DRAFT_2517 0.22 +0.2 2,547,050 - EX28DRAFT_2517 0.22 -0.6 2,547,088 + EX28DRAFT_2517 0.26 +0.1 2,547,169 + EX28DRAFT_2517 0.36 -1.0 2,547,169 + EX28DRAFT_2517 0.36 +0.0 2,547,170 - EX28DRAFT_2517 0.36 -0.4 2,547,170 - EX28DRAFT_2517 0.36 -0.2 2,547,251 + EX28DRAFT_2517 0.45 +0.2 2,547,252 - EX28DRAFT_2517 0.45 -1.2 2,547,452 - EX28DRAFT_2517 0.68 -0.7 2,547,602 - EX28DRAFT_2517 0.86 -1.5 2,547,602 - EX28DRAFT_2517 0.86 +0.4 2,547,616 - EX28DRAFT_2517 0.87 -1.0 2,547,658 + -0.4 2,547,660 + +0.3 2,547,783 + -0.3 2,547,783 + +0.2 2,547,829 + +0.1 2,547,829 + -0.5 2,547,830 - -0.0 2,547,830 - -0.2 2,547,917 + -2.3 2,547,917 + -0.2 2,547,918 - -0.2 2,547,965 + EX28DRAFT_2518 0.11 -0.2 2,547,965 + EX28DRAFT_2518 0.11 -1.0 2,547,965 + EX28DRAFT_2518 0.11 -0.2 2,547,965 + EX28DRAFT_2518 0.11 -0.1 2,547,966 - EX28DRAFT_2518 0.11 +0.1 2,548,049 + EX28DRAFT_2518 0.18 -1.0 2,548,415 - EX28DRAFT_2518 0.46 +0.2 2,548,539 + EX28DRAFT_2518 0.56 +0.6 2,548,539 + EX28DRAFT_2518 0.56 +0.1 2,548,621 + EX28DRAFT_2518 0.62 -2.2 2,548,621 + EX28DRAFT_2518 0.62 -1.2 2,548,674 - EX28DRAFT_2518 0.66 -0.0 2,548,712 + EX28DRAFT_2518 0.69 -1.0
Or see this region's nucleotide sequence