Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2414 and EX28DRAFT_2415 are separated by 76 nucleotides EX28DRAFT_2415 and EX28DRAFT_2416 overlap by 4 nucleotides EX28DRAFT_2416 and EX28DRAFT_2417 are separated by 105 nucleotides
EX28DRAFT_2414: EX28DRAFT_2414 - Predicted membrane protein, at 2,436,336 to 2,438,318
_2414
EX28DRAFT_2415: EX28DRAFT_2415 - AraC-type DNA-binding domain-containing proteins, at 2,438,395 to 2,439,189
_2415
EX28DRAFT_2416: EX28DRAFT_2416 - 2-dehydropantoate 2-reductase, at 2,439,186 to 2,440,076
_2416
EX28DRAFT_2417: EX28DRAFT_2417 - carboxylate-amine ligase, YbdK family, at 2,440,182 to 2,441,303
_2417
Position (kb)
2439
2440
2441 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2438.209 kb on + strand at 2438.212 kb on + strand at 2438.213 kb on - strand at 2438.248 kb on + strand at 2438.248 kb on + strand at 2438.289 kb on - strand at 2438.289 kb on - strand at 2438.351 kb on - strand at 2438.378 kb on + strand at 2438.412 kb on + strand at 2438.413 kb on - strand at 2438.415 kb on + strand at 2438.422 kb on + strand at 2438.422 kb on + strand at 2438.423 kb on - strand at 2438.480 kb on - strand, within EX28DRAFT_2415 at 2438.656 kb on + strand, within EX28DRAFT_2415 at 2438.657 kb on - strand, within EX28DRAFT_2415 at 2439.158 kb on - strand at 2439.449 kb on - strand, within EX28DRAFT_2416 at 2439.910 kb on - strand, within EX28DRAFT_2416 at 2439.954 kb on + strand, within EX28DRAFT_2416 at 2439.955 kb on - strand, within EX28DRAFT_2416 at 2440.112 kb on - strand at 2440.113 kb on + strand at 2440.114 kb on - strand at 2440.114 kb on - strand at 2440.148 kb on + strand at 2440.200 kb on - strand at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.529 kb on + strand, within EX28DRAFT_2417 at 2440.530 kb on - strand, within EX28DRAFT_2417 at 2440.577 kb on - strand, within EX28DRAFT_2417 at 2440.626 kb on + strand, within EX28DRAFT_2417 at 2440.627 kb on - strand, within EX28DRAFT_2417 at 2440.665 kb on - strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.691 kb on + strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.907 kb on + strand, within EX28DRAFT_2417 at 2440.990 kb on - strand, within EX28DRAFT_2417 at 2440.991 kb on + strand, within EX28DRAFT_2417 at 2440.992 kb on - strand, within EX28DRAFT_2417
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,438,209 + +1.8 2,438,212 + -0.7 2,438,213 - +0.6 2,438,248 + -0.3 2,438,248 + +0.2 2,438,289 - -0.3 2,438,289 - +0.0 2,438,351 - +0.0 2,438,378 + -1.8 2,438,412 + -0.6 2,438,413 - -0.2 2,438,415 + -0.1 2,438,422 + +0.0 2,438,422 + -0.2 2,438,423 - +0.3 2,438,480 - EX28DRAFT_2415 0.11 +0.4 2,438,656 + EX28DRAFT_2415 0.33 +0.1 2,438,657 - EX28DRAFT_2415 0.33 +0.0 2,439,158 - +0.4 2,439,449 - EX28DRAFT_2416 0.30 -0.3 2,439,910 - EX28DRAFT_2416 0.81 -0.2 2,439,954 + EX28DRAFT_2416 0.86 -0.1 2,439,955 - EX28DRAFT_2416 0.86 -0.1 2,440,112 - -0.1 2,440,113 + -0.5 2,440,114 - -0.1 2,440,114 - +0.3 2,440,148 + -0.1 2,440,200 - +0.1 2,440,527 + EX28DRAFT_2417 0.31 +0.1 2,440,527 + EX28DRAFT_2417 0.31 +0.2 2,440,529 + EX28DRAFT_2417 0.31 +0.8 2,440,530 - EX28DRAFT_2417 0.31 -0.0 2,440,577 - EX28DRAFT_2417 0.35 -0.3 2,440,626 + EX28DRAFT_2417 0.40 -0.6 2,440,627 - EX28DRAFT_2417 0.40 +0.6 2,440,665 - EX28DRAFT_2417 0.43 -0.1 2,440,689 + EX28DRAFT_2417 0.45 -0.3 2,440,689 + EX28DRAFT_2417 0.45 -0.1 2,440,689 + EX28DRAFT_2417 0.45 -0.7 2,440,689 + EX28DRAFT_2417 0.45 -0.2 2,440,691 + EX28DRAFT_2417 0.45 -0.8 2,440,692 - EX28DRAFT_2417 0.45 +0.0 2,440,692 - EX28DRAFT_2417 0.45 +0.5 2,440,907 + EX28DRAFT_2417 0.65 -0.5 2,440,990 - EX28DRAFT_2417 0.72 +1.3 2,440,991 + EX28DRAFT_2417 0.72 -0.0 2,440,992 - EX28DRAFT_2417 0.72 -1.2
Or see this region's nucleotide sequence