Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2404 and EX28DRAFT_2405 are separated by 74 nucleotides EX28DRAFT_2405 and EX28DRAFT_2406 are separated by 75 nucleotides
EX28DRAFT_2404: EX28DRAFT_2404 - Transcriptional regulator, at 2,429,977 to 2,430,858
_2404
EX28DRAFT_2405: EX28DRAFT_2405 - Mannose-6-phosphate isomerase, at 2,430,933 to 2,431,295
_2405
EX28DRAFT_2406: EX28DRAFT_2406 - AraC-type DNA-binding domain-containing proteins, at 2,431,371 to 2,432,189
_2406
Position (kb)
2430
2431
2432 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2429.945 kb on + strand at 2429.946 kb on - strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.973 kb on - strand at 2430.121 kb on - strand, within EX28DRAFT_2404 at 2430.170 kb on - strand, within EX28DRAFT_2404 at 2430.363 kb on + strand, within EX28DRAFT_2404 at 2430.363 kb on + strand, within EX28DRAFT_2404 at 2430.364 kb on - strand, within EX28DRAFT_2404 at 2430.364 kb on - strand, within EX28DRAFT_2404 at 2430.776 kb on - strand at 2430.865 kb on + strand at 2430.921 kb on + strand at 2431.005 kb on + strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.020 kb on + strand, within EX28DRAFT_2405 at 2431.043 kb on + strand, within EX28DRAFT_2405 at 2431.043 kb on + strand, within EX28DRAFT_2405 at 2431.044 kb on - strand, within EX28DRAFT_2405 at 2431.044 kb on - strand, within EX28DRAFT_2405 at 2431.069 kb on + strand, within EX28DRAFT_2405 at 2431.070 kb on - strand, within EX28DRAFT_2405 at 2431.116 kb on - strand, within EX28DRAFT_2405 at 2431.119 kb on + strand, within EX28DRAFT_2405 at 2431.175 kb on + strand, within EX28DRAFT_2405 at 2431.175 kb on + strand, within EX28DRAFT_2405 at 2431.176 kb on - strand, within EX28DRAFT_2405 at 2431.176 kb on - strand, within EX28DRAFT_2405 at 2431.203 kb on - strand, within EX28DRAFT_2405 at 2431.210 kb on + strand, within EX28DRAFT_2405 at 2431.268 kb on + strand at 2431.289 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.292 kb on - strand at 2431.292 kb on - strand at 2431.308 kb on + strand at 2431.308 kb on + strand at 2431.308 kb on + strand at 2431.330 kb on + strand at 2431.331 kb on - strand at 2431.550 kb on - strand, within EX28DRAFT_2406 at 2431.571 kb on - strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.670 kb on - strand, within EX28DRAFT_2406 at 2431.670 kb on - strand, within EX28DRAFT_2406 at 2431.696 kb on + strand, within EX28DRAFT_2406 at 2431.810 kb on - strand, within EX28DRAFT_2406 at 2431.865 kb on + strand, within EX28DRAFT_2406 at 2431.866 kb on - strand, within EX28DRAFT_2406 at 2431.916 kb on + strand, within EX28DRAFT_2406 at 2431.918 kb on + strand, within EX28DRAFT_2406 at 2431.918 kb on + strand, within EX28DRAFT_2406 at 2431.918 kb on + strand, within EX28DRAFT_2406 at 2431.918 kb on + strand, within EX28DRAFT_2406 at 2431.918 kb on + strand, within EX28DRAFT_2406 at 2431.919 kb on - strand, within EX28DRAFT_2406 at 2431.919 kb on - strand, within EX28DRAFT_2406 at 2431.919 kb on - strand, within EX28DRAFT_2406 at 2431.919 kb on - strand, within EX28DRAFT_2406 at 2431.919 kb on - strand, within EX28DRAFT_2406 at 2431.968 kb on + strand, within EX28DRAFT_2406 at 2431.969 kb on - strand, within EX28DRAFT_2406 at 2431.969 kb on - strand, within EX28DRAFT_2406 at 2432.009 kb on + strand, within EX28DRAFT_2406 at 2432.018 kb on + strand, within EX28DRAFT_2406 at 2432.018 kb on + strand, within EX28DRAFT_2406 at 2432.018 kb on + strand, within EX28DRAFT_2406 at 2432.095 kb on + strand, within EX28DRAFT_2406 at 2432.096 kb on - strand, within EX28DRAFT_2406 at 2432.114 kb on - strand at 2432.189 kb on + strand at 2432.189 kb on + strand at 2432.189 kb on + strand at 2432.189 kb on + strand at 2432.189 kb on + strand at 2432.189 kb on + strand at 2432.190 kb on - strand at 2432.190 kb on - strand at 2432.190 kb on - strand at 2432.190 kb on - strand at 2432.190 kb on - strand at 2432.190 kb on - strand at 2432.191 kb on + strand at 2432.191 kb on + strand at 2432.191 kb on + strand at 2432.191 kb on + strand at 2432.191 kb on + strand at 2432.192 kb on - strand at 2432.192 kb on - strand at 2432.192 kb on - strand at 2432.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,429,945 + -0.4 2,429,946 - -0.5 2,429,972 + -0.1 2,429,972 + +0.4 2,429,972 + +0.2 2,429,973 - -0.7 2,430,121 - EX28DRAFT_2404 0.16 -0.0 2,430,170 - EX28DRAFT_2404 0.22 +1.1 2,430,363 + EX28DRAFT_2404 0.44 -0.0 2,430,363 + EX28DRAFT_2404 0.44 +0.4 2,430,364 - EX28DRAFT_2404 0.44 +0.0 2,430,364 - EX28DRAFT_2404 0.44 -0.0 2,430,776 - -0.1 2,430,865 + +0.4 2,430,921 + +0.0 2,431,005 + EX28DRAFT_2405 0.20 +1.3 2,431,006 - EX28DRAFT_2405 0.20 -0.6 2,431,006 - EX28DRAFT_2405 0.20 -0.2 2,431,006 - EX28DRAFT_2405 0.20 -0.3 2,431,006 - EX28DRAFT_2405 0.20 -0.3 2,431,020 + EX28DRAFT_2405 0.24 -0.1 2,431,043 + EX28DRAFT_2405 0.30 +0.4 2,431,043 + EX28DRAFT_2405 0.30 -0.2 2,431,044 - EX28DRAFT_2405 0.31 +0.1 2,431,044 - EX28DRAFT_2405 0.31 -1.1 2,431,069 + EX28DRAFT_2405 0.37 -0.0 2,431,070 - EX28DRAFT_2405 0.38 +0.2 2,431,116 - EX28DRAFT_2405 0.50 -0.0 2,431,119 + EX28DRAFT_2405 0.51 -0.2 2,431,175 + EX28DRAFT_2405 0.67 +0.4 2,431,175 + EX28DRAFT_2405 0.67 +0.1 2,431,176 - EX28DRAFT_2405 0.67 -0.1 2,431,176 - EX28DRAFT_2405 0.67 -1.0 2,431,203 - EX28DRAFT_2405 0.74 -0.8 2,431,210 + EX28DRAFT_2405 0.76 -0.1 2,431,268 + -0.3 2,431,289 + +0.1 2,431,291 + +0.2 2,431,291 + -0.5 2,431,291 + -0.6 2,431,291 + +0.1 2,431,292 - +0.8 2,431,292 - -0.4 2,431,308 + +0.2 2,431,308 + -0.3 2,431,308 + -0.5 2,431,330 + -0.3 2,431,331 - +0.4 2,431,550 - EX28DRAFT_2406 0.22 +0.2 2,431,571 - EX28DRAFT_2406 0.24 -0.3 2,431,665 + EX28DRAFT_2406 0.36 -0.2 2,431,665 + EX28DRAFT_2406 0.36 -0.2 2,431,665 + EX28DRAFT_2406 0.36 -0.7 2,431,666 - EX28DRAFT_2406 0.36 -0.2 2,431,666 - EX28DRAFT_2406 0.36 +0.1 2,431,666 - EX28DRAFT_2406 0.36 -0.1 2,431,666 - EX28DRAFT_2406 0.36 +0.3 2,431,666 - EX28DRAFT_2406 0.36 +0.0 2,431,667 + EX28DRAFT_2406 0.36 -0.5 2,431,667 + EX28DRAFT_2406 0.36 +0.2 2,431,667 + EX28DRAFT_2406 0.36 -0.2 2,431,668 - EX28DRAFT_2406 0.36 -0.7 2,431,668 - EX28DRAFT_2406 0.36 -0.2 2,431,668 - EX28DRAFT_2406 0.36 -0.7 2,431,670 - EX28DRAFT_2406 0.37 +0.8 2,431,670 - EX28DRAFT_2406 0.37 -0.6 2,431,696 + EX28DRAFT_2406 0.40 +0.6 2,431,810 - EX28DRAFT_2406 0.54 -0.0 2,431,865 + EX28DRAFT_2406 0.60 -0.5 2,431,866 - EX28DRAFT_2406 0.60 +0.1 2,431,916 + EX28DRAFT_2406 0.67 +0.2 2,431,918 + EX28DRAFT_2406 0.67 +0.1 2,431,918 + EX28DRAFT_2406 0.67 -0.4 2,431,918 + EX28DRAFT_2406 0.67 +0.1 2,431,918 + EX28DRAFT_2406 0.67 +0.2 2,431,918 + EX28DRAFT_2406 0.67 +0.5 2,431,919 - EX28DRAFT_2406 0.67 +0.9 2,431,919 - EX28DRAFT_2406 0.67 -1.3 2,431,919 - EX28DRAFT_2406 0.67 +0.2 2,431,919 - EX28DRAFT_2406 0.67 +0.1 2,431,919 - EX28DRAFT_2406 0.67 -0.5 2,431,968 + EX28DRAFT_2406 0.73 -0.4 2,431,969 - EX28DRAFT_2406 0.73 -0.8 2,431,969 - EX28DRAFT_2406 0.73 -0.7 2,432,009 + EX28DRAFT_2406 0.78 +0.0 2,432,018 + EX28DRAFT_2406 0.79 -0.4 2,432,018 + EX28DRAFT_2406 0.79 +0.1 2,432,018 + EX28DRAFT_2406 0.79 +0.2 2,432,095 + EX28DRAFT_2406 0.88 +0.5 2,432,096 - EX28DRAFT_2406 0.89 +0.1 2,432,114 - +0.5 2,432,189 + +0.1 2,432,189 + -0.1 2,432,189 + -0.1 2,432,189 + +0.3 2,432,189 + -0.1 2,432,189 + +0.3 2,432,190 - -1.1 2,432,190 - +0.3 2,432,190 - +0.1 2,432,190 - +0.3 2,432,190 - -0.6 2,432,190 - -0.3 2,432,191 + -0.3 2,432,191 + -0.1 2,432,191 + -0.1 2,432,191 + -2.8 2,432,191 + -1.4 2,432,192 - +0.2 2,432,192 - +0.1 2,432,192 - +0.5 2,432,192 - -0.2
Or see this region's nucleotide sequence