Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2360 and EX28DRAFT_2361 are separated by 89 nucleotides EX28DRAFT_2361 and EX28DRAFT_2362 are separated by 19 nucleotides
EX28DRAFT_2360: EX28DRAFT_2360 - Uncharacterized conserved protein, at 2,380,162 to 2,381,403
_2360
EX28DRAFT_2361: EX28DRAFT_2361 - ABC-type sugar transport system, periplasmic component, at 2,381,493 to 2,382,557
_2361
EX28DRAFT_2362: EX28DRAFT_2362 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 2,382,577 to 2,383,572
_2362
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2380.895 kb on + strand, within EX28DRAFT_2360 at 2380.896 kb on - strand, within EX28DRAFT_2360 at 2380.929 kb on - strand, within EX28DRAFT_2360 at 2381.023 kb on - strand, within EX28DRAFT_2360 at 2381.096 kb on + strand, within EX28DRAFT_2360 at 2381.096 kb on + strand, within EX28DRAFT_2360 at 2381.097 kb on - strand, within EX28DRAFT_2360 at 2381.292 kb on - strand at 2381.408 kb on - strand at 2381.495 kb on - strand at 2381.495 kb on - strand at 2381.495 kb on - strand at 2382.017 kb on - strand, within EX28DRAFT_2361 at 2382.266 kb on + strand, within EX28DRAFT_2361 at 2382.277 kb on + strand, within EX28DRAFT_2361 at 2382.277 kb on + strand, within EX28DRAFT_2361 at 2382.393 kb on - strand, within EX28DRAFT_2361 at 2382.590 kb on - strand at 2382.590 kb on - strand at 2382.593 kb on + strand at 2382.631 kb on + strand at 2382.631 kb on + strand at 2382.632 kb on - strand at 2382.632 kb on - strand at 2382.634 kb on - strand at 2382.634 kb on - strand at 2382.647 kb on + strand at 2382.648 kb on - strand at 2382.947 kb on + strand, within EX28DRAFT_2362 at 2382.947 kb on + strand, within EX28DRAFT_2362 at 2383.062 kb on + strand, within EX28DRAFT_2362 at 2383.127 kb on + strand, within EX28DRAFT_2362 at 2383.127 kb on + strand, within EX28DRAFT_2362 at 2383.188 kb on + strand, within EX28DRAFT_2362 at 2383.216 kb on - strand, within EX28DRAFT_2362 at 2383.381 kb on - strand, within EX28DRAFT_2362 at 2383.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,380,895 + EX28DRAFT_2360 0.59 -0.8 2,380,896 - EX28DRAFT_2360 0.59 +0.1 2,380,929 - EX28DRAFT_2360 0.62 +4.1 2,381,023 - EX28DRAFT_2360 0.69 -0.1 2,381,096 + EX28DRAFT_2360 0.75 +0.3 2,381,096 + EX28DRAFT_2360 0.75 -0.4 2,381,097 - EX28DRAFT_2360 0.75 -0.8 2,381,292 - +0.3 2,381,408 - -0.6 2,381,495 - -0.2 2,381,495 - +0.7 2,381,495 - +0.9 2,382,017 - EX28DRAFT_2361 0.49 -0.2 2,382,266 + EX28DRAFT_2361 0.73 +1.0 2,382,277 + EX28DRAFT_2361 0.74 -0.2 2,382,277 + EX28DRAFT_2361 0.74 +0.7 2,382,393 - EX28DRAFT_2361 0.85 +0.1 2,382,590 - +0.3 2,382,590 - +0.3 2,382,593 + -0.5 2,382,631 + +0.7 2,382,631 + +0.7 2,382,632 - +0.2 2,382,632 - +0.3 2,382,634 - +0.5 2,382,634 - -0.6 2,382,647 + -0.2 2,382,648 - -0.3 2,382,947 + EX28DRAFT_2362 0.37 +1.0 2,382,947 + EX28DRAFT_2362 0.37 -1.7 2,383,062 + EX28DRAFT_2362 0.49 +0.3 2,383,127 + EX28DRAFT_2362 0.55 -1.0 2,383,127 + EX28DRAFT_2362 0.55 +0.1 2,383,188 + EX28DRAFT_2362 0.61 +0.8 2,383,216 - EX28DRAFT_2362 0.64 +0.2 2,383,381 - EX28DRAFT_2362 0.81 +0.4 2,383,509 - +0.1
Or see this region's nucleotide sequence