Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2146 and EX28DRAFT_2147 are separated by 90 nucleotides EX28DRAFT_2147 and EX28DRAFT_2148 are separated by 222 nucleotides
EX28DRAFT_2146: EX28DRAFT_2146 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 2,168,490 to 2,170,853
_2146
EX28DRAFT_2147: EX28DRAFT_2147 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,170,944 to 2,172,539
_2147
EX28DRAFT_2148: EX28DRAFT_2148 - Uncharacterized protein conserved in bacteria, at 2,172,762 to 2,173,682
_2148
Position (kb)
2170
2171
2172
2173 Strain fitness (log2 ratio)
-1
0
1 at 2169.988 kb on - strand, within EX28DRAFT_2146 at 2169.989 kb on + strand, within EX28DRAFT_2146 at 2170.176 kb on + strand, within EX28DRAFT_2146 at 2170.237 kb on - strand, within EX28DRAFT_2146 at 2170.242 kb on + strand, within EX28DRAFT_2146 at 2170.243 kb on - strand, within EX28DRAFT_2146 at 2170.851 kb on + strand at 2170.851 kb on + strand at 2170.972 kb on + strand at 2170.973 kb on - strand at 2171.016 kb on - strand at 2171.090 kb on - strand at 2171.090 kb on - strand at 2171.231 kb on + strand, within EX28DRAFT_2147 at 2171.383 kb on + strand, within EX28DRAFT_2147 at 2171.708 kb on + strand, within EX28DRAFT_2147 at 2171.708 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.822 kb on - strand, within EX28DRAFT_2147 at 2171.830 kb on + strand, within EX28DRAFT_2147 at 2171.882 kb on + strand, within EX28DRAFT_2147 at 2172.172 kb on + strand, within EX28DRAFT_2147 at 2172.198 kb on - strand, within EX28DRAFT_2147 at 2172.199 kb on + strand, within EX28DRAFT_2147 at 2172.232 kb on + strand, within EX28DRAFT_2147 at 2172.233 kb on - strand, within EX28DRAFT_2147 at 2172.534 kb on + strand at 2172.534 kb on + strand at 2172.535 kb on - strand at 2172.535 kb on - strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.692 kb on - strand at 2172.692 kb on - strand at 2172.692 kb on - strand at 2172.693 kb on + strand at 2172.694 kb on - strand at 2172.694 kb on - strand at 2172.694 kb on - strand at 2172.722 kb on - strand at 2172.745 kb on + strand at 2172.745 kb on + strand at 2172.745 kb on + strand at 2172.746 kb on - strand at 2172.746 kb on - strand at 2172.746 kb on - strand at 2172.749 kb on + strand at 2172.749 kb on + strand at 2172.776 kb on - strand at 2172.925 kb on - strand, within EX28DRAFT_2148 at 2172.956 kb on + strand, within EX28DRAFT_2148 at 2172.990 kb on + strand, within EX28DRAFT_2148 at 2173.020 kb on - strand, within EX28DRAFT_2148 at 2173.092 kb on + strand, within EX28DRAFT_2148 at 2173.096 kb on - strand, within EX28DRAFT_2148 at 2173.096 kb on - strand, within EX28DRAFT_2148 at 2173.317 kb on + strand, within EX28DRAFT_2148 at 2173.506 kb on + strand, within EX28DRAFT_2148
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,169,988 - EX28DRAFT_2146 0.63 +0.4 2,169,989 + EX28DRAFT_2146 0.63 -0.3 2,170,176 + EX28DRAFT_2146 0.71 +0.9 2,170,237 - EX28DRAFT_2146 0.74 +0.5 2,170,242 + EX28DRAFT_2146 0.74 +0.3 2,170,243 - EX28DRAFT_2146 0.74 -0.5 2,170,851 + -0.3 2,170,851 + -0.4 2,170,972 + -0.2 2,170,973 - -0.0 2,171,016 - +0.4 2,171,090 - -0.5 2,171,090 - -0.2 2,171,231 + EX28DRAFT_2147 0.18 -0.1 2,171,383 + EX28DRAFT_2147 0.28 -0.4 2,171,708 + EX28DRAFT_2147 0.48 -0.2 2,171,708 + EX28DRAFT_2147 0.48 -1.1 2,171,821 + EX28DRAFT_2147 0.55 -0.9 2,171,821 + EX28DRAFT_2147 0.55 +0.2 2,171,821 + EX28DRAFT_2147 0.55 +0.2 2,171,821 + EX28DRAFT_2147 0.55 +0.6 2,171,822 - EX28DRAFT_2147 0.55 +0.7 2,171,830 + EX28DRAFT_2147 0.56 -0.5 2,171,882 + EX28DRAFT_2147 0.59 -0.2 2,172,172 + EX28DRAFT_2147 0.77 +0.2 2,172,198 - EX28DRAFT_2147 0.79 -0.4 2,172,199 + EX28DRAFT_2147 0.79 -0.4 2,172,232 + EX28DRAFT_2147 0.81 -0.1 2,172,233 - EX28DRAFT_2147 0.81 -0.6 2,172,534 + -0.3 2,172,534 + -0.9 2,172,535 - +0.0 2,172,535 - +0.4 2,172,691 + +1.2 2,172,691 + -0.2 2,172,691 + -0.7 2,172,691 + -0.6 2,172,692 - -1.0 2,172,692 - +0.3 2,172,692 - -1.5 2,172,693 + -0.8 2,172,694 - -0.1 2,172,694 - -0.7 2,172,694 - -1.3 2,172,722 - -0.8 2,172,745 + +0.6 2,172,745 + -0.2 2,172,745 + -0.4 2,172,746 - -0.2 2,172,746 - +0.1 2,172,746 - -0.7 2,172,749 + -0.3 2,172,749 + +0.7 2,172,776 - -0.4 2,172,925 - EX28DRAFT_2148 0.18 +1.7 2,172,956 + EX28DRAFT_2148 0.21 -1.5 2,172,990 + EX28DRAFT_2148 0.25 -0.2 2,173,020 - EX28DRAFT_2148 0.28 -0.7 2,173,092 + EX28DRAFT_2148 0.36 -0.7 2,173,096 - EX28DRAFT_2148 0.36 -1.4 2,173,096 - EX28DRAFT_2148 0.36 -0.7 2,173,317 + EX28DRAFT_2148 0.60 -0.2 2,173,506 + EX28DRAFT_2148 0.81 -1.0
Or see this region's nucleotide sequence