Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2050 and EX28DRAFT_2051 are separated by 27 nucleotides EX28DRAFT_2051 and EX28DRAFT_2052 are separated by 267 nucleotides EX28DRAFT_2052 and EX28DRAFT_2053 are separated by 70 nucleotides
EX28DRAFT_2050: EX28DRAFT_2050 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 2,070,314 to 2,072,593
_2050
EX28DRAFT_2051: EX28DRAFT_2051 - Uncharacterized conserved protein, at 2,072,621 to 2,072,941
_2051
EX28DRAFT_2052: EX28DRAFT_2052 - cold shock domain protein CspD, at 2,073,209 to 2,073,430
_2052
EX28DRAFT_2053: EX28DRAFT_2053 - ABC-type antimicrobial peptide transport system, ATPase component, at 2,073,501 to 2,075,441
_2053
Position (kb)
2073
2074 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2072.230 kb on - strand, within EX28DRAFT_2050 at 2072.489 kb on - strand at 2072.504 kb on + strand at 2072.521 kb on + strand at 2072.522 kb on - strand at 2072.564 kb on + strand at 2072.612 kb on + strand at 2072.620 kb on - strand at 2072.688 kb on - strand, within EX28DRAFT_2051 at 2072.713 kb on + strand, within EX28DRAFT_2051 at 2072.714 kb on - strand, within EX28DRAFT_2051 at 2072.742 kb on + strand, within EX28DRAFT_2051 at 2072.777 kb on + strand, within EX28DRAFT_2051 at 2072.778 kb on - strand, within EX28DRAFT_2051 at 2072.778 kb on - strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.785 kb on - strand, within EX28DRAFT_2051 at 2072.802 kb on - strand, within EX28DRAFT_2051 at 2072.851 kb on + strand, within EX28DRAFT_2051 at 2072.852 kb on - strand, within EX28DRAFT_2051 at 2072.859 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.893 kb on + strand, within EX28DRAFT_2051 at 2072.936 kb on - strand at 2072.943 kb on - strand at 2072.964 kb on - strand at 2072.976 kb on - strand at 2072.979 kb on + strand at 2072.979 kb on + strand at 2072.980 kb on - strand at 2072.990 kb on + strand at 2072.990 kb on + strand at 2072.990 kb on + strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.994 kb on - strand at 2073.031 kb on - strand at 2073.060 kb on + strand at 2073.177 kb on + strand at 2073.177 kb on + strand at 2073.178 kb on - strand at 2073.178 kb on - strand at 2073.178 kb on - strand at 2073.182 kb on + strand at 2073.182 kb on + strand at 2073.183 kb on - strand at 2073.191 kb on + strand at 2073.227 kb on - strand at 2073.227 kb on - strand at 2073.300 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.397 kb on - strand, within EX28DRAFT_2052 at 2073.397 kb on - strand, within EX28DRAFT_2052 at 2073.428 kb on + strand at 2073.441 kb on + strand at 2073.442 kb on - strand at 2073.448 kb on + strand at 2073.449 kb on - strand at 2073.822 kb on - strand, within EX28DRAFT_2053 at 2073.890 kb on + strand, within EX28DRAFT_2053 at 2073.891 kb on - strand, within EX28DRAFT_2053 at 2073.891 kb on - strand, within EX28DRAFT_2053 at 2074.059 kb on - strand, within EX28DRAFT_2053 at 2074.121 kb on + strand, within EX28DRAFT_2053 at 2074.121 kb on + strand, within EX28DRAFT_2053 at 2074.122 kb on - strand, within EX28DRAFT_2053 at 2074.321 kb on + strand, within EX28DRAFT_2053 at 2074.322 kb on - strand, within EX28DRAFT_2053
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,072,230 - EX28DRAFT_2050 0.84 -1.9 2,072,489 - -2.3 2,072,504 + -1.6 2,072,521 + -3.7 2,072,522 - -2.4 2,072,564 + -1.8 2,072,612 + -3.1 2,072,620 - -2.3 2,072,688 - EX28DRAFT_2051 0.21 +0.3 2,072,713 + EX28DRAFT_2051 0.29 -0.9 2,072,714 - EX28DRAFT_2051 0.29 -0.8 2,072,742 + EX28DRAFT_2051 0.38 -1.1 2,072,777 + EX28DRAFT_2051 0.49 -2.4 2,072,778 - EX28DRAFT_2051 0.49 -2.2 2,072,778 - EX28DRAFT_2051 0.49 +0.3 2,072,784 + EX28DRAFT_2051 0.51 -1.6 2,072,784 + EX28DRAFT_2051 0.51 -1.0 2,072,784 + EX28DRAFT_2051 0.51 -2.1 2,072,785 - EX28DRAFT_2051 0.51 -0.2 2,072,802 - EX28DRAFT_2051 0.56 -0.7 2,072,851 + EX28DRAFT_2051 0.72 -1.6 2,072,852 - EX28DRAFT_2051 0.72 -0.1 2,072,859 + EX28DRAFT_2051 0.74 -0.6 2,072,863 + EX28DRAFT_2051 0.75 -1.4 2,072,863 + EX28DRAFT_2051 0.75 -0.5 2,072,863 + EX28DRAFT_2051 0.75 +0.1 2,072,863 + EX28DRAFT_2051 0.75 -0.9 2,072,863 + EX28DRAFT_2051 0.75 +0.1 2,072,863 + EX28DRAFT_2051 0.75 +0.1 2,072,864 - EX28DRAFT_2051 0.76 -0.1 2,072,864 - EX28DRAFT_2051 0.76 -0.8 2,072,864 - EX28DRAFT_2051 0.76 -1.5 2,072,864 - EX28DRAFT_2051 0.76 -0.5 2,072,864 - EX28DRAFT_2051 0.76 -0.8 2,072,864 - EX28DRAFT_2051 0.76 -0.7 2,072,864 - EX28DRAFT_2051 0.76 -0.7 2,072,893 + EX28DRAFT_2051 0.85 +0.0 2,072,936 - -1.3 2,072,943 - -1.2 2,072,964 - -1.2 2,072,976 - -1.5 2,072,979 + -0.6 2,072,979 + -0.7 2,072,980 - +0.4 2,072,990 + -0.1 2,072,990 + +0.5 2,072,990 + +0.6 2,072,991 - -1.2 2,072,991 - +0.4 2,072,991 - -0.6 2,072,991 - +1.0 2,072,994 - -0.3 2,073,031 - -0.1 2,073,060 + -0.8 2,073,177 + +1.1 2,073,177 + +0.5 2,073,178 - -0.5 2,073,178 - -0.3 2,073,178 - -0.1 2,073,182 + -0.6 2,073,182 + +1.2 2,073,183 - +0.3 2,073,191 + +0.2 2,073,227 - +0.2 2,073,227 - -0.2 2,073,300 - EX28DRAFT_2052 0.41 -0.3 2,073,364 - EX28DRAFT_2052 0.70 -0.0 2,073,364 - EX28DRAFT_2052 0.70 -0.6 2,073,364 - EX28DRAFT_2052 0.70 -0.2 2,073,364 - EX28DRAFT_2052 0.70 -0.6 2,073,364 - EX28DRAFT_2052 0.70 +0.6 2,073,364 - EX28DRAFT_2052 0.70 -1.6 2,073,397 - EX28DRAFT_2052 0.85 -1.0 2,073,397 - EX28DRAFT_2052 0.85 +0.4 2,073,428 + -2.0 2,073,441 + -0.4 2,073,442 - -0.0 2,073,448 + -0.0 2,073,449 - +0.1 2,073,822 - EX28DRAFT_2053 0.17 +0.2 2,073,890 + EX28DRAFT_2053 0.20 +0.2 2,073,891 - EX28DRAFT_2053 0.20 -0.3 2,073,891 - EX28DRAFT_2053 0.20 -0.6 2,074,059 - EX28DRAFT_2053 0.29 -0.1 2,074,121 + EX28DRAFT_2053 0.32 -0.0 2,074,121 + EX28DRAFT_2053 0.32 -0.0 2,074,122 - EX28DRAFT_2053 0.32 -0.5 2,074,321 + EX28DRAFT_2053 0.42 +0.2 2,074,322 - EX28DRAFT_2053 0.42 -0.3
Or see this region's nucleotide sequence