Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2029 and EX28DRAFT_2030 are separated by 127 nucleotides EX28DRAFT_2030 and EX28DRAFT_2031 are separated by 123 nucleotides
EX28DRAFT_2029: EX28DRAFT_2029 - Predicted membrane protein, at 2,041,714 to 2,042,406
_2029
EX28DRAFT_2030: EX28DRAFT_2030 - YcaO-type kinase domain, at 2,042,534 to 2,044,294
_2030
EX28DRAFT_2031: EX28DRAFT_2031 - formate transporter FocA, at 2,044,418 to 2,045,558
_2031
Position (kb)
2042
2043
2044
2045 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2041.584 kb on - strand at 2041.638 kb on + strand at 2041.639 kb on - strand at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.820 kb on - strand, within EX28DRAFT_2029 at 2041.884 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.919 kb on + strand, within EX28DRAFT_2029 at 2041.920 kb on - strand, within EX28DRAFT_2029 at 2041.920 kb on - strand, within EX28DRAFT_2029 at 2041.996 kb on + strand, within EX28DRAFT_2029 at 2041.996 kb on + strand, within EX28DRAFT_2029 at 2042.025 kb on + strand, within EX28DRAFT_2029 at 2042.026 kb on - strand, within EX28DRAFT_2029 at 2042.038 kb on + strand, within EX28DRAFT_2029 at 2042.039 kb on - strand, within EX28DRAFT_2029 at 2042.149 kb on + strand, within EX28DRAFT_2029 at 2042.150 kb on - strand, within EX28DRAFT_2029 at 2042.201 kb on + strand, within EX28DRAFT_2029 at 2042.201 kb on + strand, within EX28DRAFT_2029 at 2042.202 kb on - strand, within EX28DRAFT_2029 at 2042.322 kb on + strand, within EX28DRAFT_2029 at 2042.322 kb on + strand, within EX28DRAFT_2029 at 2042.323 kb on - strand, within EX28DRAFT_2029 at 2042.323 kb on - strand, within EX28DRAFT_2029 at 2042.324 kb on + strand, within EX28DRAFT_2029 at 2042.324 kb on + strand, within EX28DRAFT_2029 at 2042.370 kb on + strand at 2042.419 kb on + strand at 2042.512 kb on - strand at 2042.512 kb on - strand at 2042.516 kb on - strand at 2042.675 kb on - strand at 2042.759 kb on + strand, within EX28DRAFT_2030 at 2042.784 kb on - strand, within EX28DRAFT_2030 at 2042.815 kb on + strand, within EX28DRAFT_2030 at 2043.035 kb on + strand, within EX28DRAFT_2030 at 2043.035 kb on + strand, within EX28DRAFT_2030 at 2043.035 kb on + strand, within EX28DRAFT_2030 at 2043.036 kb on - strand, within EX28DRAFT_2030 at 2043.036 kb on - strand, within EX28DRAFT_2030 at 2043.036 kb on - strand, within EX28DRAFT_2030 at 2043.036 kb on - strand, within EX28DRAFT_2030 at 2043.036 kb on - strand, within EX28DRAFT_2030 at 2043.065 kb on + strand, within EX28DRAFT_2030 at 2043.065 kb on + strand, within EX28DRAFT_2030 at 2043.065 kb on + strand, within EX28DRAFT_2030 at 2043.066 kb on - strand, within EX28DRAFT_2030 at 2043.392 kb on - strand, within EX28DRAFT_2030 at 2043.481 kb on + strand, within EX28DRAFT_2030 at 2043.482 kb on - strand, within EX28DRAFT_2030 at 2043.533 kb on - strand, within EX28DRAFT_2030 at 2043.533 kb on - strand, within EX28DRAFT_2030 at 2043.644 kb on + strand, within EX28DRAFT_2030 at 2043.644 kb on + strand, within EX28DRAFT_2030 at 2043.688 kb on + strand, within EX28DRAFT_2030 at 2043.714 kb on - strand, within EX28DRAFT_2030 at 2043.742 kb on + strand, within EX28DRAFT_2030 at 2043.860 kb on - strand, within EX28DRAFT_2030 at 2043.877 kb on - strand, within EX28DRAFT_2030 at 2043.911 kb on + strand, within EX28DRAFT_2030 at 2043.913 kb on + strand, within EX28DRAFT_2030 at 2044.040 kb on + strand, within EX28DRAFT_2030 at 2044.041 kb on - strand, within EX28DRAFT_2030 at 2044.041 kb on - strand, within EX28DRAFT_2030 at 2044.103 kb on + strand, within EX28DRAFT_2030 at 2044.123 kb on + strand at 2044.123 kb on + strand at 2044.302 kb on + strand at 2044.324 kb on - strand at 2044.341 kb on - strand at 2044.342 kb on + strand at 2044.428 kb on - strand at 2044.450 kb on + strand at 2044.468 kb on + strand at 2044.483 kb on - strand at 2044.483 kb on - strand at 2044.611 kb on - strand, within EX28DRAFT_2031 at 2044.612 kb on + strand, within EX28DRAFT_2031 at 2044.612 kb on + strand, within EX28DRAFT_2031 at 2044.650 kb on + strand, within EX28DRAFT_2031 at 2044.683 kb on - strand, within EX28DRAFT_2031 at 2044.806 kb on + strand, within EX28DRAFT_2031 at 2044.807 kb on - strand, within EX28DRAFT_2031 at 2044.854 kb on + strand, within EX28DRAFT_2031 at 2045.113 kb on - strand, within EX28DRAFT_2031 at 2045.184 kb on - strand, within EX28DRAFT_2031 at 2045.248 kb on - strand, within EX28DRAFT_2031 at 2045.278 kb on + strand, within EX28DRAFT_2031
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,041,584 - -4.4 2,041,638 + -0.2 2,041,639 - -1.5 2,041,813 - EX28DRAFT_2029 0.14 +0.7 2,041,813 - EX28DRAFT_2029 0.14 +0.1 2,041,813 - EX28DRAFT_2029 0.14 +0.2 2,041,820 - EX28DRAFT_2029 0.15 -0.0 2,041,884 + EX28DRAFT_2029 0.25 -0.2 2,041,916 + EX28DRAFT_2029 0.29 -0.3 2,041,916 + EX28DRAFT_2029 0.29 +0.4 2,041,916 + EX28DRAFT_2029 0.29 -0.6 2,041,919 + EX28DRAFT_2029 0.30 +0.4 2,041,920 - EX28DRAFT_2029 0.30 -0.1 2,041,920 - EX28DRAFT_2029 0.30 -2.2 2,041,996 + EX28DRAFT_2029 0.41 -0.6 2,041,996 + EX28DRAFT_2029 0.41 -0.1 2,042,025 + EX28DRAFT_2029 0.45 -0.1 2,042,026 - EX28DRAFT_2029 0.45 -0.2 2,042,038 + EX28DRAFT_2029 0.47 +0.0 2,042,039 - EX28DRAFT_2029 0.47 +0.3 2,042,149 + EX28DRAFT_2029 0.63 -0.1 2,042,150 - EX28DRAFT_2029 0.63 +0.8 2,042,201 + EX28DRAFT_2029 0.70 +0.7 2,042,201 + EX28DRAFT_2029 0.70 +0.0 2,042,202 - EX28DRAFT_2029 0.70 +1.2 2,042,322 + EX28DRAFT_2029 0.88 +0.1 2,042,322 + EX28DRAFT_2029 0.88 -0.3 2,042,323 - EX28DRAFT_2029 0.88 -0.5 2,042,323 - EX28DRAFT_2029 0.88 -1.3 2,042,324 + EX28DRAFT_2029 0.88 -0.1 2,042,324 + EX28DRAFT_2029 0.88 +0.0 2,042,370 + -0.1 2,042,419 + -1.1 2,042,512 - -0.0 2,042,512 - -0.3 2,042,516 - +0.5 2,042,675 - -0.3 2,042,759 + EX28DRAFT_2030 0.13 +0.0 2,042,784 - EX28DRAFT_2030 0.14 +0.3 2,042,815 + EX28DRAFT_2030 0.16 -0.7 2,043,035 + EX28DRAFT_2030 0.28 +0.1 2,043,035 + EX28DRAFT_2030 0.28 +1.1 2,043,035 + EX28DRAFT_2030 0.28 +0.5 2,043,036 - EX28DRAFT_2030 0.29 -0.2 2,043,036 - EX28DRAFT_2030 0.29 -0.9 2,043,036 - EX28DRAFT_2030 0.29 -1.0 2,043,036 - EX28DRAFT_2030 0.29 -0.5 2,043,036 - EX28DRAFT_2030 0.29 +0.1 2,043,065 + EX28DRAFT_2030 0.30 +0.1 2,043,065 + EX28DRAFT_2030 0.30 -0.1 2,043,065 + EX28DRAFT_2030 0.30 +0.9 2,043,066 - EX28DRAFT_2030 0.30 +0.1 2,043,392 - EX28DRAFT_2030 0.49 -0.4 2,043,481 + EX28DRAFT_2030 0.54 -0.0 2,043,482 - EX28DRAFT_2030 0.54 -0.2 2,043,533 - EX28DRAFT_2030 0.57 -0.4 2,043,533 - EX28DRAFT_2030 0.57 +1.5 2,043,644 + EX28DRAFT_2030 0.63 +0.3 2,043,644 + EX28DRAFT_2030 0.63 -0.1 2,043,688 + EX28DRAFT_2030 0.66 +0.6 2,043,714 - EX28DRAFT_2030 0.67 +0.4 2,043,742 + EX28DRAFT_2030 0.69 +0.2 2,043,860 - EX28DRAFT_2030 0.75 +0.4 2,043,877 - EX28DRAFT_2030 0.76 +0.3 2,043,911 + EX28DRAFT_2030 0.78 -0.8 2,043,913 + EX28DRAFT_2030 0.78 +0.5 2,044,040 + EX28DRAFT_2030 0.86 -0.2 2,044,041 - EX28DRAFT_2030 0.86 +0.3 2,044,041 - EX28DRAFT_2030 0.86 -0.7 2,044,103 + EX28DRAFT_2030 0.89 +0.8 2,044,123 + -0.2 2,044,123 + +0.0 2,044,302 + -0.7 2,044,324 - +0.2 2,044,341 - -0.8 2,044,342 + -0.2 2,044,428 - -0.2 2,044,450 + -1.3 2,044,468 + +0.2 2,044,483 - -0.5 2,044,483 - +0.3 2,044,611 - EX28DRAFT_2031 0.17 +0.3 2,044,612 + EX28DRAFT_2031 0.17 +0.2 2,044,612 + EX28DRAFT_2031 0.17 +0.4 2,044,650 + EX28DRAFT_2031 0.20 +0.0 2,044,683 - EX28DRAFT_2031 0.23 -0.3 2,044,806 + EX28DRAFT_2031 0.34 -0.6 2,044,807 - EX28DRAFT_2031 0.34 +0.5 2,044,854 + EX28DRAFT_2031 0.38 +0.5 2,045,113 - EX28DRAFT_2031 0.61 +0.2 2,045,184 - EX28DRAFT_2031 0.67 +1.7 2,045,248 - EX28DRAFT_2031 0.73 +1.1 2,045,278 + EX28DRAFT_2031 0.75 +0.1
Or see this region's nucleotide sequence