Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1979 and EX28DRAFT_1980 are separated by 80 nucleotides EX28DRAFT_1980 and EX28DRAFT_1981 are separated by 57 nucleotides EX28DRAFT_1981 and EX28DRAFT_1982 are separated by 123 nucleotides EX28DRAFT_1982 and EX28DRAFT_1983 are separated by 19 nucleotides
EX28DRAFT_1979: EX28DRAFT_1979 - Uncharacterized protein conserved in bacteria, at 1,979,889 to 1,980,551
_1979
EX28DRAFT_1980: EX28DRAFT_1980 - methylglyoxal synthase, at 1,980,632 to 1,981,090
_1980
EX28DRAFT_1981: EX28DRAFT_1981 - Superfamily I DNA and RNA helicases, at 1,981,148 to 1,983,202
_1981
EX28DRAFT_1982: EX28DRAFT_1982 - Predicted membrane protein, at 1,983,326 to 1,983,772
_1982
EX28DRAFT_1983: EX28DRAFT_1983 - TIGR01666 family membrane protein, at 1,983,792 to 1,985,954
_1983
Position (kb) 1981
1982
1983
1984 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1980.282 kb on - strand, within EX28DRAFT_1979 at 1980.339 kb on + strand, within EX28DRAFT_1979 at 1980.339 kb on + strand, within EX28DRAFT_1979 at 1980.340 kb on - strand, within EX28DRAFT_1979 at 1980.549 kb on + strand at 1980.626 kb on - strand at 1980.626 kb on - strand at 1980.631 kb on + strand at 1980.697 kb on + strand, within EX28DRAFT_1980 at 1980.698 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.970 kb on + strand, within EX28DRAFT_1980 at 1981.048 kb on + strand at 1981.049 kb on - strand at 1981.059 kb on - strand at 1981.127 kb on + strand at 1981.150 kb on - strand at 1981.177 kb on + strand at 1981.263 kb on + strand at 1981.392 kb on + strand, within EX28DRAFT_1981 at 1981.393 kb on - strand, within EX28DRAFT_1981 at 1981.430 kb on - strand, within EX28DRAFT_1981 at 1981.486 kb on + strand, within EX28DRAFT_1981 at 1981.487 kb on - strand, within EX28DRAFT_1981 at 1981.487 kb on - strand, within EX28DRAFT_1981 at 1981.516 kb on + strand, within EX28DRAFT_1981 at 1981.517 kb on - strand, within EX28DRAFT_1981 at 1981.600 kb on + strand, within EX28DRAFT_1981 at 1981.786 kb on - strand, within EX28DRAFT_1981 at 1981.826 kb on - strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.948 kb on + strand, within EX28DRAFT_1981 at 1981.948 kb on + strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.360 kb on - strand, within EX28DRAFT_1981 at 1982.405 kb on - strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.701 kb on + strand, within EX28DRAFT_1981 at 1983.011 kb on - strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.096 kb on + strand at 1983.097 kb on - strand at 1983.227 kb on - strand at 1983.227 kb on - strand at 1983.231 kb on + strand at 1983.256 kb on + strand at 1983.641 kb on - strand, within EX28DRAFT_1982 at 1983.775 kb on - strand at 1983.792 kb on - strand at 1983.818 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.853 kb on + strand at 1983.857 kb on + strand at 1984.076 kb on + strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,980,282 - EX28DRAFT_1979 0.59 +0.3 1,980,339 + EX28DRAFT_1979 0.68 +0.1 1,980,339 + EX28DRAFT_1979 0.68 +0.3 1,980,340 - EX28DRAFT_1979 0.68 +1.8 1,980,549 + +0.2 1,980,626 - +0.3 1,980,626 - -0.1 1,980,631 + -0.2 1,980,697 + EX28DRAFT_1980 0.14 +0.4 1,980,698 - EX28DRAFT_1980 0.14 +0.1 1,980,713 - EX28DRAFT_1980 0.18 -0.3 1,980,713 - EX28DRAFT_1980 0.18 -0.0 1,980,713 - EX28DRAFT_1980 0.18 +0.3 1,980,713 - EX28DRAFT_1980 0.18 +0.1 1,980,970 + EX28DRAFT_1980 0.74 -0.6 1,981,048 + +0.2 1,981,049 - +0.0 1,981,059 - -0.3 1,981,127 + +0.7 1,981,150 - -0.7 1,981,177 + -0.1 1,981,263 + +0.1 1,981,392 + EX28DRAFT_1981 0.12 +0.0 1,981,393 - EX28DRAFT_1981 0.12 -0.4 1,981,430 - EX28DRAFT_1981 0.14 -0.6 1,981,486 + EX28DRAFT_1981 0.16 +0.6 1,981,487 - EX28DRAFT_1981 0.16 +0.0 1,981,487 - EX28DRAFT_1981 0.16 -0.1 1,981,516 + EX28DRAFT_1981 0.18 +0.5 1,981,517 - EX28DRAFT_1981 0.18 +0.2 1,981,600 + EX28DRAFT_1981 0.22 -0.8 1,981,786 - EX28DRAFT_1981 0.31 +0.4 1,981,826 - EX28DRAFT_1981 0.33 +0.1 1,981,903 + EX28DRAFT_1981 0.37 -0.1 1,981,903 + EX28DRAFT_1981 0.37 -0.0 1,981,903 + EX28DRAFT_1981 0.37 +1.3 1,981,948 + EX28DRAFT_1981 0.39 +1.7 1,981,948 + EX28DRAFT_1981 0.39 -0.2 1,981,949 - EX28DRAFT_1981 0.39 +0.1 1,981,949 - EX28DRAFT_1981 0.39 +0.5 1,981,949 - EX28DRAFT_1981 0.39 +0.9 1,982,359 + EX28DRAFT_1981 0.59 -0.2 1,982,359 + EX28DRAFT_1981 0.59 +0.2 1,982,360 - EX28DRAFT_1981 0.59 -0.5 1,982,405 - EX28DRAFT_1981 0.61 +0.6 1,982,632 + EX28DRAFT_1981 0.72 -0.2 1,982,632 + EX28DRAFT_1981 0.72 +0.5 1,982,701 + EX28DRAFT_1981 0.76 -0.1 1,983,011 - +0.5 1,983,091 + +0.0 1,983,091 + +0.0 1,983,091 + -1.8 1,983,096 + +0.5 1,983,097 - +0.4 1,983,227 - -0.3 1,983,227 - +0.6 1,983,231 + -0.9 1,983,256 + +0.3 1,983,641 - EX28DRAFT_1982 0.70 +0.3 1,983,775 - +0.1 1,983,792 - +0.0 1,983,818 + +0.8 1,983,840 + +0.2 1,983,840 + +0.1 1,983,840 + +0.0 1,983,840 + +0.5 1,983,840 + +0.1 1,983,841 - -0.4 1,983,841 - +0.3 1,983,853 + +0.3 1,983,857 + +0.5 1,984,076 + EX28DRAFT_1983 0.13 +0.7 1,984,098 - EX28DRAFT_1983 0.14 +0.2 1,984,098 - EX28DRAFT_1983 0.14 +0.1 1,984,164 + EX28DRAFT_1983 0.17 +0.3 1,984,164 + EX28DRAFT_1983 0.17 +0.1 1,984,165 - EX28DRAFT_1983 0.17 -0.5 1,984,165 - EX28DRAFT_1983 0.17 +0.2 1,984,165 - EX28DRAFT_1983 0.17 +0.2
Or see this region's nucleotide sequence