Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1904 and EX28DRAFT_1905 are separated by 224 nucleotides EX28DRAFT_1905 and EX28DRAFT_1906 are separated by 5 nucleotides
EX28DRAFT_1904: EX28DRAFT_1904 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,911,608 to 1,912,675
_1904
EX28DRAFT_1905: EX28DRAFT_1905 - Tat-translocated enzyme, at 1,912,900 to 1,914,183
_1905
EX28DRAFT_1906: EX28DRAFT_1906 - Predicted periplasmic lipoprotein involved in iron transport, at 1,914,189 to 1,915,316
_1906
Position (kb)
1912
1913
1914
1915 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1911.942 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.984 kb on + strand, within EX28DRAFT_1904 at 1911.985 kb on - strand, within EX28DRAFT_1904 at 1911.999 kb on + strand, within EX28DRAFT_1904 at 1912.000 kb on - strand, within EX28DRAFT_1904 at 1912.200 kb on + strand, within EX28DRAFT_1904 at 1912.275 kb on - strand, within EX28DRAFT_1904 at 1912.330 kb on + strand, within EX28DRAFT_1904 at 1912.330 kb on + strand, within EX28DRAFT_1904 at 1912.331 kb on - strand, within EX28DRAFT_1904 at 1912.423 kb on - strand, within EX28DRAFT_1904 at 1912.454 kb on - strand, within EX28DRAFT_1904 at 1912.488 kb on - strand, within EX28DRAFT_1904 at 1912.488 kb on - strand, within EX28DRAFT_1904 at 1912.528 kb on + strand, within EX28DRAFT_1904 at 1912.643 kb on - strand at 1912.648 kb on + strand at 1912.715 kb on + strand at 1912.726 kb on + strand at 1912.731 kb on + strand at 1912.731 kb on + strand at 1912.731 kb on + strand at 1912.732 kb on - strand at 1912.735 kb on + strand at 1912.735 kb on + strand at 1912.736 kb on - strand at 1912.766 kb on - strand at 1912.827 kb on + strand at 1912.831 kb on - strand at 1912.840 kb on + strand at 1912.858 kb on - strand at 1912.928 kb on + strand at 1912.928 kb on + strand at 1912.986 kb on + strand at 1912.986 kb on + strand at 1912.987 kb on - strand at 1913.117 kb on + strand, within EX28DRAFT_1905 at 1913.158 kb on + strand, within EX28DRAFT_1905 at 1914.002 kb on + strand, within EX28DRAFT_1905 at 1914.171 kb on + strand at 1914.178 kb on - strand at 1914.178 kb on - strand at 1914.178 kb on - strand at 1914.363 kb on - strand, within EX28DRAFT_1906 at 1914.410 kb on + strand, within EX28DRAFT_1906 at 1914.410 kb on + strand, within EX28DRAFT_1906 at 1914.411 kb on - strand, within EX28DRAFT_1906 at 1914.470 kb on - strand, within EX28DRAFT_1906 at 1914.470 kb on - strand, within EX28DRAFT_1906 at 1914.613 kb on + strand, within EX28DRAFT_1906 at 1914.613 kb on + strand, within EX28DRAFT_1906 at 1914.614 kb on - strand, within EX28DRAFT_1906 at 1914.614 kb on - strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.779 kb on - strand, within EX28DRAFT_1906 at 1914.800 kb on - strand, within EX28DRAFT_1906 at 1914.909 kb on - strand, within EX28DRAFT_1906 at 1915.021 kb on + strand, within EX28DRAFT_1906
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,911,942 + EX28DRAFT_1904 0.31 +0.3 1,911,949 + EX28DRAFT_1904 0.32 +0.1 1,911,949 + EX28DRAFT_1904 0.32 +0.8 1,911,984 + EX28DRAFT_1904 0.35 +0.5 1,911,985 - EX28DRAFT_1904 0.35 -0.2 1,911,999 + EX28DRAFT_1904 0.37 +0.1 1,912,000 - EX28DRAFT_1904 0.37 +0.6 1,912,200 + EX28DRAFT_1904 0.55 +0.4 1,912,275 - EX28DRAFT_1904 0.62 +0.8 1,912,330 + EX28DRAFT_1904 0.68 +2.3 1,912,330 + EX28DRAFT_1904 0.68 +0.1 1,912,331 - EX28DRAFT_1904 0.68 +0.3 1,912,423 - EX28DRAFT_1904 0.76 -0.4 1,912,454 - EX28DRAFT_1904 0.79 -0.5 1,912,488 - EX28DRAFT_1904 0.82 +0.4 1,912,488 - EX28DRAFT_1904 0.82 +0.8 1,912,528 + EX28DRAFT_1904 0.86 -0.0 1,912,643 - +0.2 1,912,648 + -0.7 1,912,715 + -0.2 1,912,726 + -0.2 1,912,731 + +2.0 1,912,731 + -0.0 1,912,731 + -1.8 1,912,732 - -0.0 1,912,735 + -0.3 1,912,735 + +0.1 1,912,736 - +0.0 1,912,766 - +0.5 1,912,827 + +0.6 1,912,831 - +0.1 1,912,840 + +0.0 1,912,858 - -0.5 1,912,928 + -0.0 1,912,928 + -0.3 1,912,986 + -0.4 1,912,986 + -0.3 1,912,987 - +0.2 1,913,117 + EX28DRAFT_1905 0.17 +0.1 1,913,158 + EX28DRAFT_1905 0.20 +2.4 1,914,002 + EX28DRAFT_1905 0.86 +0.4 1,914,171 + +0.1 1,914,178 - +0.3 1,914,178 - -0.0 1,914,178 - +0.6 1,914,363 - EX28DRAFT_1906 0.15 -0.0 1,914,410 + EX28DRAFT_1906 0.20 +0.2 1,914,410 + EX28DRAFT_1906 0.20 -0.6 1,914,411 - EX28DRAFT_1906 0.20 +1.4 1,914,470 - EX28DRAFT_1906 0.25 -0.7 1,914,470 - EX28DRAFT_1906 0.25 +0.2 1,914,613 + EX28DRAFT_1906 0.38 +0.8 1,914,613 + EX28DRAFT_1906 0.38 -0.2 1,914,614 - EX28DRAFT_1906 0.38 +0.1 1,914,614 - EX28DRAFT_1906 0.38 +0.1 1,914,617 + EX28DRAFT_1906 0.38 +0.1 1,914,617 + EX28DRAFT_1906 0.38 +0.6 1,914,617 + EX28DRAFT_1906 0.38 -0.6 1,914,617 + EX28DRAFT_1906 0.38 -0.1 1,914,779 - EX28DRAFT_1906 0.52 -0.6 1,914,800 - EX28DRAFT_1906 0.54 -1.8 1,914,909 - EX28DRAFT_1906 0.64 +0.0 1,915,021 + EX28DRAFT_1906 0.74 -0.5
Or see this region's nucleotide sequence