Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1884 and EX28DRAFT_1885 are separated by 106 nucleotides EX28DRAFT_1885 and EX28DRAFT_1886 are separated by 164 nucleotides EX28DRAFT_1886 and EX28DRAFT_1887 are separated by 61 nucleotides EX28DRAFT_1887 and EX28DRAFT_1888 are separated by 41 nucleotides
EX28DRAFT_1884: EX28DRAFT_1884 - Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1, at 1,897,562 to 1,898,104
_1884
EX28DRAFT_1885: EX28DRAFT_1885 - hypothetical protein, at 1,898,211 to 1,898,531
_1885
EX28DRAFT_1886: EX28DRAFT_1886 - Thin aggregative fimbriae synthesis protein, at 1,898,696 to 1,899,028
_1886
EX28DRAFT_1887: EX28DRAFT_1887 - Curlin associated repeat, at 1,899,090 to 1,899,542
_1887
EX28DRAFT_1888: EX28DRAFT_1888 - Curlin associated repeat, at 1,899,584 to 1,900,039
_1888
Position (kb) 1899
1900 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1898.104 kb on + strand at 1898.134 kb on - strand at 1898.139 kb on + strand at 1898.260 kb on + strand, within EX28DRAFT_1885 at 1898.261 kb on - strand, within EX28DRAFT_1885 at 1898.261 kb on - strand, within EX28DRAFT_1885 at 1898.268 kb on - strand, within EX28DRAFT_1885 at 1898.320 kb on + strand, within EX28DRAFT_1885 at 1898.321 kb on - strand, within EX28DRAFT_1885 at 1898.342 kb on + strand, within EX28DRAFT_1885 at 1898.522 kb on - strand at 1898.522 kb on - strand at 1898.534 kb on + strand at 1898.538 kb on + strand at 1898.538 kb on + strand at 1898.539 kb on - strand at 1898.643 kb on + strand at 1898.643 kb on + strand at 1898.643 kb on + strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.795 kb on - strand, within EX28DRAFT_1886 at 1898.813 kb on + strand, within EX28DRAFT_1886 at 1898.813 kb on + strand, within EX28DRAFT_1886 at 1898.814 kb on - strand, within EX28DRAFT_1886 at 1898.839 kb on + strand, within EX28DRAFT_1886 at 1898.840 kb on - strand, within EX28DRAFT_1886 at 1898.892 kb on - strand, within EX28DRAFT_1886 at 1898.899 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.948 kb on - strand, within EX28DRAFT_1886 at 1898.959 kb on + strand, within EX28DRAFT_1886 at 1899.017 kb on + strand at 1899.023 kb on - strand at 1899.074 kb on - strand at 1899.095 kb on - strand at 1899.408 kb on - strand, within EX28DRAFT_1887 at 1899.476 kb on + strand, within EX28DRAFT_1887 at 1899.476 kb on + strand, within EX28DRAFT_1887 at 1899.489 kb on - strand, within EX28DRAFT_1887 at 1899.709 kb on + strand, within EX28DRAFT_1888 at 1899.730 kb on + strand, within EX28DRAFT_1888 at 1899.731 kb on - strand, within EX28DRAFT_1888 at 1899.809 kb on - strand, within EX28DRAFT_1888 at 1900.065 kb on - strand at 1900.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,898,104 + -0.3 1,898,134 - -0.4 1,898,139 + -0.4 1,898,260 + EX28DRAFT_1885 0.15 +0.4 1,898,261 - EX28DRAFT_1885 0.16 +0.1 1,898,261 - EX28DRAFT_1885 0.16 +0.2 1,898,268 - EX28DRAFT_1885 0.18 +0.1 1,898,320 + EX28DRAFT_1885 0.34 +0.1 1,898,321 - EX28DRAFT_1885 0.34 +0.8 1,898,342 + EX28DRAFT_1885 0.41 -0.0 1,898,522 - +0.3 1,898,522 - -0.1 1,898,534 + -0.2 1,898,538 + -0.8 1,898,538 + +0.0 1,898,539 - -0.6 1,898,643 + +0.2 1,898,643 + -0.4 1,898,643 + -2.2 1,898,644 - +0.2 1,898,644 - -0.3 1,898,644 - +1.5 1,898,644 - +0.2 1,898,795 - EX28DRAFT_1886 0.30 +0.2 1,898,813 + EX28DRAFT_1886 0.35 +0.3 1,898,813 + EX28DRAFT_1886 0.35 +0.3 1,898,814 - EX28DRAFT_1886 0.35 +0.1 1,898,839 + EX28DRAFT_1886 0.43 +2.7 1,898,840 - EX28DRAFT_1886 0.43 -0.0 1,898,892 - EX28DRAFT_1886 0.59 +0.0 1,898,899 + EX28DRAFT_1886 0.61 +0.8 1,898,947 + EX28DRAFT_1886 0.75 -0.3 1,898,947 + EX28DRAFT_1886 0.75 +0.2 1,898,947 + EX28DRAFT_1886 0.75 +0.1 1,898,947 + EX28DRAFT_1886 0.75 +0.5 1,898,947 + EX28DRAFT_1886 0.75 +0.1 1,898,948 - EX28DRAFT_1886 0.76 +1.5 1,898,959 + EX28DRAFT_1886 0.79 -0.5 1,899,017 + -0.1 1,899,023 - -0.4 1,899,074 - +0.1 1,899,095 - -0.6 1,899,408 - EX28DRAFT_1887 0.70 +0.9 1,899,476 + EX28DRAFT_1887 0.85 +0.2 1,899,476 + EX28DRAFT_1887 0.85 -0.2 1,899,489 - EX28DRAFT_1887 0.88 +0.6 1,899,709 + EX28DRAFT_1888 0.27 +0.1 1,899,730 + EX28DRAFT_1888 0.32 -1.1 1,899,731 - EX28DRAFT_1888 0.32 -0.6 1,899,809 - EX28DRAFT_1888 0.49 -0.1 1,900,065 - -0.1 1,900,286 + -0.2
Or see this region's nucleotide sequence